RSLE2_ORYSJ
ID RSLE2_ORYSJ Reviewed; 722 AA.
AC Q6AVI0; A0A0P0W2P2;
DT 09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Zinc finger BED domain-containing protein RICESLEEPER 2;
DE AltName: Full=Transposase-like protein RICESLEEPER 2;
GN OrderedLocusNames=Os03g0733400, LOC_Os03g52310;
GN ORFNames=OsJ_12466, OSJNBa0027J18.23, OSJNBa0079G12.4;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=23067104; DOI=10.1186/1471-2229-12-192;
RA Knip M., de Pater S., Hooykaas P.J.;
RT "The SLEEPER genes: a transposase-derived angiosperm-specific gene
RT family.";
RL BMC Plant Biol. 12:192-192(2012).
CC -!- FUNCTION: Transposase-like protein that is essential for plant growth
CC and development. May regulate global gene expression by recruiting
CC other cellular factors. {ECO:0000269|PubMed:23067104}.
CC -!- SUBUNIT: Homodimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- DISRUPTION PHENOTYPE: Reduced plant size and amount of seeds.
CC {ECO:0000269|PubMed:23067104}.
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DR EMBL; AC096689; AAT78789.1; -; Genomic_DNA.
DR EMBL; AC103550; AAT77879.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF98716.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13087.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS86236.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ28483.1; -; Genomic_DNA.
DR EMBL; AK121128; BAH00332.1; -; mRNA.
DR RefSeq; XP_015632123.1; XM_015776637.1.
DR AlphaFoldDB; Q6AVI0; -.
DR STRING; 4530.OS03T0733400-01; -.
DR PaxDb; Q6AVI0; -.
DR PRIDE; Q6AVI0; -.
DR EnsemblPlants; Os03t0733400-01; Os03t0733400-01; Os03g0733400.
DR GeneID; 4334009; -.
DR Gramene; Os03t0733400-01; Os03t0733400-01; Os03g0733400.
DR KEGG; osa:4334009; -.
DR eggNOG; KOG1121; Eukaryota.
DR HOGENOM; CLU_009123_1_2_1; -.
DR InParanoid; Q6AVI0; -.
DR OMA; EMIQEAW; -.
DR OrthoDB; 223749at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q6AVI0; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; IMP:UniProtKB.
DR InterPro; IPR045259; DAYSLEEPER-like.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR23272; PTHR23272; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF14372; DUF4413; 1.
DR SUPFAM; SSF53098; SSF53098; 1.
DR SUPFAM; SSF57667; SSF57667; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..722
FT /note="Zinc finger BED domain-containing protein
FT RICESLEEPER 2"
FT /id="PRO_0000429563"
FT ZN_FING 66..134
FT /note="BED-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT REGION 572..592
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 617..702
FT /note="HATC (Hobo-Ac-Tam3) domain"
FT COMPBIAS 578..592
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 89
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 92
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 113
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 127
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
SQ SEQUENCE 722 AA; 80976 MW; 911397FEC78693B4 CRC64;
MTEETGNDFQ MVQGYEIVPS NEEAHAEEVQ GDELVLAEDL AQGDEVQVNG LVSAEMSTPP
TSRRRRKKSL VWEHFTIEAV SGGATRACCK LCKQTFAYSS GSKIAGTSHL KRHITLGSCP
IIKNQEHKLA LTPAVGTDND GEGTVERPSK RRYRYTGYAN AAFDQDRSCS YLAKMIILHD
YPLHIVQQPA FTTFIDSLQP RFRVVDVETM EGEVYAVYQK EKENLMQAFS TMPGRISLTI
GLWTTSQTLG YVSLAGQFID SEWKIHRRML NFMMVSSPHS ENALSEAIST SLSDWNMKDK
LFTITLDNDC SSHDIYSANL RDYLSNKNNL MLKGQLFVVR CYAHILNAVA QDVIASIHGV
IYNIRESIKF IKASPSREEK FAEIALQLEI PSTKTLCLDV TTQWNTTYLM LLAALDYKQA
FSTLETSDDN YNEAPSAEDW KKVEAACNYL KLLYDSAHSI MAAANPTSNL FFHEAWKLQL
ELSNATGHED PVFSSIAKDM HERFDKYWKD CNLVLAIAVV MDPRFKMKLV EFSYSKIYGV
EAAKYVKVVD DAVHELYKEY VAQPLPLTPA YVEQGDGNNA PASENGTQAT APSTGDGLVD
FDMYLSEIAT SQPTKSELEQ YLDESLTPRI QEFDILNWWK LNTLKFPTLS RMARDILAIP
MSMVSSGNSI FSAGTGTRML DDYRSSLRPE IVEALVCAKD WLQYLPATPE APSTTLVKVD
AP
