RSLE3_ORYSJ
ID RSLE3_ORYSJ Reviewed; 752 AA.
AC Q75HY5; A0A0P0WRF7;
DT 09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Zinc finger BED domain-containing protein RICESLEEPER 3;
DE AltName: Full=Transposase-like protein RICESLEEPER 3;
GN OrderedLocusNames=Os05g0583200, LOC_Os05g50640; ORFNames=OSJNBb0035N21.10;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP FUNCTION, AND SUBCELLULAR LOCATION.
RX PubMed=23067104; DOI=10.1186/1471-2229-12-192;
RA Knip M., de Pater S., Hooykaas P.J.;
RT "The SLEEPER genes: a transposase-derived angiosperm-specific gene
RT family.";
RL BMC Plant Biol. 12:192-192(2012).
CC -!- FUNCTION: Transposase-like protein that is essential for plant growth
CC and development. May regulate global gene expression by recruiting
CC other cellular factors. {ECO:0000269|PubMed:23067104}.
CC -!- SUBUNIT: Homodimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:23067104}.
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DR EMBL; AC134929; AAS16892.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF18359.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS95547.1; -; Genomic_DNA.
DR EMBL; AK102230; BAG95453.1; -; mRNA.
DR RefSeq; XP_015637732.1; XM_015782246.1.
DR RefSeq; XP_015637733.1; XM_015782247.1.
DR AlphaFoldDB; Q75HY5; -.
DR STRING; 4530.OS05T0583200-01; -.
DR PaxDb; Q75HY5; -.
DR PRIDE; Q75HY5; -.
DR EnsemblPlants; Os05t0583200-01; Os05t0583200-01; Os05g0583200.
DR GeneID; 4339741; -.
DR Gramene; Os05t0583200-01; Os05t0583200-01; Os05g0583200.
DR KEGG; osa:4339741; -.
DR eggNOG; KOG1121; Eukaryota.
DR HOGENOM; CLU_009123_1_2_1; -.
DR InParanoid; Q75HY5; -.
DR OMA; EHEMGHE; -.
DR OrthoDB; 223749at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q75HY5; OS.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; TAS:UniProtKB.
DR InterPro; IPR045259; DAYSLEEPER-like.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR23272; PTHR23272; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF14372; DUF4413; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SUPFAM; SSF53098; SSF53098; 1.
DR SUPFAM; SSF57667; SSF57667; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..752
FT /note="Zinc finger BED domain-containing protein
FT RICESLEEPER 3"
FT /id="PRO_0000429564"
FT ZN_FING 106..166
FT /note="BED-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT REGION 647..733
FT /note="HATC (Hobo-Ac-Tam3) domain"
FT BINDING 129
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 132
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 153
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 159
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
SQ SEQUENCE 752 AA; 84675 MW; 99C0C71A6C9ACE61 CRC64;
MCEPSGSDDA MVHASEMVDG DEMIHGNEMV VHDSVMIDGN EMVQENVMVH GSGEMVQGSE
MVHNNEIIQV NDMIQVNEMV NGDKMAHGHE LVGVELTTPT ASRRRRKKSV VWEHFTIEEM
PGGVSRASCN LCKQTFAYSC GSKISGTSHL KRHITLASCP MLKNEDMKLS LPLATVTNND
GEGCAERVAK RHYRSTGYAN AMFDQDRTCS NLAKMIILHD YPLHIVEQRG FTAFIGSLQP
RFRVIDVDTI EGQVHSVYQK ERENLMHVFS TVPGRISLTV RLWATSQTLG YISLAAQFID
TEWRVHRRMV NFMMVSSPHS ENSLSEAIST SLSDWNMKDK LFTITLDNDP SSHDIYSANM
INYLSNKKDN IMIKGQLFVV RCYAHILNTV AQDVIASVHS VIYHIRESIK FIKASSVHED
KFAEIALQLE IPSAKTLCLD VTTQWNTTYL MLLAALDYQQ VFASLETCDG DYNEAPSTED
WKKVEAACSY LSLLYDSAHN IMAAPNPTSN IFFHEAWKLQ SELSNAIAHE DPIFRSTAKI
MHERFDKYWK DCNLVLAIAV VMDPRFKMKL VEFSYSKIHS VEAAKYVKVV DDAIHELYSE
YATQGEANRD AHVTDNSAAV TPPNGDELLD FDIYLSEIAT SQPSISELEQ YLEEALMPRI
QDFEILEWWK LNTIKFPTLS KMARDVLAIP MSMVSSGSSI FSATATGSQM LDDYRSSLRP
ETVEALFCAK DWLQYPPATT EAPSTALVKM EN