RSLE4_ORYSJ
ID RSLE4_ORYSJ Reviewed; 684 AA.
AC Q0JMB2; A0A0P0V3C1; A2ZTS9;
DT 09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
DT 09-JUL-2014, sequence version 3.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=Zinc finger BED domain-containing protein RICESLEEPER 4;
DE AltName: Full=Transposase-like protein RICESLEEPER 4;
GN OrderedLocusNames=Os01g0518400, LOC_Os01g33410;
GN ORFNames=B1003B09, OsJ_02008;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION.
RX PubMed=23067104; DOI=10.1186/1471-2229-12-192;
RA Knip M., de Pater S., Hooykaas P.J.;
RT "The SLEEPER genes: a transposase-derived angiosperm-specific gene
RT family.";
RL BMC Plant Biol. 12:192-192(2012).
CC -!- FUNCTION: Transposase-like protein that is essential for plant growth
CC and development. May regulate global gene expression by recruiting
CC other cellular factors. {ECO:0000269|PubMed:23067104}.
CC -!- SUBUNIT: Homodimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF05116.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AP004222; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP008207; BAF05116.2; ALT_INIT; Genomic_DNA.
DR EMBL; AP014957; BAS72429.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ12126.1; -; Genomic_DNA.
DR EMBL; AK069603; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015621812.1; XM_015766326.1.
DR RefSeq; XP_015621813.1; XM_015766327.1.
DR AlphaFoldDB; Q0JMB2; -.
DR PaxDb; Q0JMB2; -.
DR PRIDE; Q0JMB2; -.
DR EnsemblPlants; Os01t0518400-01; Os01t0518400-01; Os01g0518400.
DR GeneID; 4323974; -.
DR Gramene; Os01t0518400-01; Os01t0518400-01; Os01g0518400.
DR KEGG; osa:4323974; -.
DR eggNOG; KOG1121; Eukaryota.
DR HOGENOM; CLU_009123_1_2_1; -.
DR InParanoid; Q0JMB2; -.
DR OMA; MIHSNEM; -.
DR OrthoDB; 223749at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q0JMB2; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; TAS:UniProtKB.
DR InterPro; IPR045259; DAYSLEEPER-like.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR23272; PTHR23272; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF14372; DUF4413; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SUPFAM; SSF53098; SSF53098; 1.
DR SUPFAM; SSF57667; SSF57667; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..684
FT /note="Zinc finger BED domain-containing protein
FT RICESLEEPER 4"
FT /id="PRO_0000429565"
FT ZN_FING 54..113
FT /note="BED-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT REGION 595..680
FT /note="HATC (Hobo-Ac-Tam3) domain"
FT BINDING 77
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 80
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 101
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT BINDING 106
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00027"
FT CONFLICT 187
FT /note="K -> R (in Ref. 6; AK069603)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 684 AA; 77030 MW; DC4151CD50659A96 CRC64;
MDEMIPKPLI SNDNEMMHGH GYTTMVHGNN EILNGNELAV HAEVIPSAST RGQKRKSAIW
EHFTLVDVSD GCKRASCIHC NQSLAYSSGS KNSGTSHLTR HIAEWCRVLK DRQKSRRYTT
YNSSNENASF DQERSCLRLA KMIILNDYPL HIVQQPAFLS FVDSVQPNFK MVDIGTIETE
VYAIYLKEKD HLQQALANIP GRISLTVGSL TTNQSIRYIS LAAQFIDSEW RLHRRVLKVM
MAPWPQSENA VSRAIIKCLS DWNMQDKLFT ITLEHDCSSH DIYSANLRNH LSGDNILMLK
GQTFAVRCYA NILNAVAHGV LASVHNVIYL IRESIKFIKA DDAHENKFAE IAVELKITSN
NSLCLDVTSE WNTTYLMLLA ALDYRQVFTL LESYYDNYGT APSTEDWKKV EAACGFLKLL
YAFTLNIMSA EGNHQTANMF FHDAWVLQLE LQNGMAHGDD VIRGIVIGIH EKFDKYWKDC
NVVLAIAVAM DPRFKMKMVE FAYSKIYGPT DAAKYVKLVD DAILDLYKEY AAQPELLPLS
PIYVDQVPAD GLPFIETGGA PATASPSTAA AGAGLVDFDM YLSEVTTMGQ PFKHELELYL
EEALTQRTPD FDVLKWWQDN TLKYPTLSRM ARDVLAIPMS TVGVGSSVFL PDNGSRSLDD
YRSSLRPELV EALLCAKDWL QYSP
