RT13_ARATH
ID RT13_ARATH Reviewed; 154 AA.
AC Q9CA19;
DT 27-JUN-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 132.
DE RecName: Full=Small ribosomal subunit protein S13, mitochondrial;
DE Short=mS13;
DE Flags: Precursor;
GN Name=RPS13; OrderedLocusNames=At1g77750; ORFNames=T32E8.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP SUBCELLULAR LOCATION.
RX PubMed=11919680; DOI=10.1007/s00294-002-0271-5;
RA Mollier P., Hoffmann B., Debast C., Small I.;
RT "The gene encoding Arabidopsis thaliana mitochondrial ribosomal protein S13
RT is a recent duplication of the gene encoding plastid S13.";
RL Curr. Genet. 40:405-409(2002).
RN [5]
RP SUBCELLULAR LOCATION.
RX PubMed=11971146; DOI=10.1105/tpc.010483;
RA Adams K.L., Daley D.O., Whelan J., Palmer J.D.;
RT "Genes for two mitochondrial ribosomal proteins in flowering plants are
RT derived from their chloroplast or cytosolic counterparts.";
RL Plant Cell 14:931-943(2002).
CC -!- FUNCTION: Located at the top of the head of the small subunit, it
CC contacts several helices of the 18S rRNA. {ECO:0000250}.
CC -!- SUBUNIT: Part of the small ribosomal subunit.
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:11919680,
CC ECO:0000269|PubMed:11971146}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS13 family.
CC {ECO:0000305}.
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DR EMBL; AC012193; AAG51625.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36017.1; -; Genomic_DNA.
DR EMBL; BT010186; AAQ22655.1; -; mRNA.
DR PIR; D96807; D96807.
DR RefSeq; NP_177898.1; NM_106424.4.
DR PDB; 6XYW; EM; 3.86 A; Bl=1-154.
DR PDBsum; 6XYW; -.
DR AlphaFoldDB; Q9CA19; -.
DR SMR; Q9CA19; -.
DR IntAct; Q9CA19; 1.
DR STRING; 3702.AT1G77750.1; -.
DR PaxDb; Q9CA19; -.
DR PRIDE; Q9CA19; -.
DR ProteomicsDB; 228047; -.
DR EnsemblPlants; AT1G77750.1; AT1G77750.1; AT1G77750.
DR GeneID; 844111; -.
DR Gramene; AT1G77750.1; AT1G77750.1; AT1G77750.
DR KEGG; ath:AT1G77750; -.
DR Araport; AT1G77750; -.
DR TAIR; locus:2203216; AT1G77750.
DR eggNOG; KOG3311; Eukaryota.
DR HOGENOM; CLU_103849_1_0_1; -.
DR OMA; CHLGITN; -.
DR OrthoDB; 1614632at2759; -.
DR PhylomeDB; Q9CA19; -.
DR PRO; PR:Q9CA19; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CA19; baseline and differential.
DR Genevisible; Q9CA19; AT.
DR GO; GO:0005763; C:mitochondrial small ribosomal subunit; TAS:TAIR.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0015935; C:small ribosomal subunit; IBA:GO_Central.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 4.10.910.10; -; 1.
DR HAMAP; MF_01315; Ribosomal_S13_S18; 1.
DR InterPro; IPR027437; 30s_Rbsml_prot_S13_C.
DR InterPro; IPR001892; Ribosomal_S13.
DR InterPro; IPR010979; Ribosomal_S13-like_H2TH.
DR InterPro; IPR018269; Ribosomal_S13_CS.
DR Pfam; PF00416; Ribosomal_S13; 1.
DR SUPFAM; SSF46946; SSF46946; 1.
DR PROSITE; PS00646; RIBOSOMAL_S13_1; 1.
DR PROSITE; PS50159; RIBOSOMAL_S13_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Mitochondrion; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide.
FT TRANSIT 1..30
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 31..154
FT /note="Small ribosomal subunit protein S13, mitochondrial"
FT /id="PRO_0000030610"
FT REGION 121..154
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 154 AA; 17272 MW; 923C9C316D842059 CRC64;
MLGLRRSATT LFDISQSLLR NVTFHGLRVQ GIRVGNAEVP NNKPLKTGLQ EVYGIGRRKS
HQVLCHLGIT NKLARDLTGK ELIDLREEVG QHQHGDELRR RVGSEIQRLV EVDCYRGSRH
RHGLPCRGQR TSTNARTKKG KAVAIAGKKK APRK
