RTH_ARATH
ID RTH_ARATH Reviewed; 231 AA.
AC Q9SD42;
DT 14-DEC-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Protein RTE1-HOMOLOG;
GN Name=RTH; OrderedLocusNames=At3g51040; ORFNames=F24M12.80;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP IDENTIFICATION.
RX PubMed=16682642; DOI=10.1073/pnas.0602239103;
RA Resnick J.S., Wen C.K., Shockey J.A., Chang C.;
RT "REVERSION-TO-ETHYLENE SENSITIVITY1, a conserved gene that regulates
RT ethylene receptor function in Arabidopsis.";
RL Proc. Natl. Acad. Sci. U.S.A. 103:7917-7922(2006).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
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DR EMBL; AL132980; CAB62626.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78740.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78741.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78742.1; -; Genomic_DNA.
DR EMBL; AY045821; AAK76495.1; -; mRNA.
DR EMBL; AY091362; AAM14301.1; -; mRNA.
DR PIR; T45735; T45735.
DR RefSeq; NP_001078268.1; NM_001084799.1.
DR RefSeq; NP_190673.1; NM_114964.5.
DR RefSeq; NP_974408.1; NM_202679.3.
DR AlphaFoldDB; Q9SD42; -.
DR BioGRID; 9586; 32.
DR IntAct; Q9SD42; 31.
DR STRING; 3702.AT3G51040.2; -.
DR PaxDb; Q9SD42; -.
DR PRIDE; Q9SD42; -.
DR ProteomicsDB; 228066; -.
DR EnsemblPlants; AT3G51040.1; AT3G51040.1; AT3G51040.
DR EnsemblPlants; AT3G51040.2; AT3G51040.2; AT3G51040.
DR EnsemblPlants; AT3G51040.3; AT3G51040.3; AT3G51040.
DR GeneID; 824268; -.
DR Gramene; AT3G51040.1; AT3G51040.1; AT3G51040.
DR Gramene; AT3G51040.2; AT3G51040.2; AT3G51040.
DR Gramene; AT3G51040.3; AT3G51040.3; AT3G51040.
DR KEGG; ath:AT3G51040; -.
DR Araport; AT3G51040; -.
DR TAIR; locus:2080978; AT3G51040.
DR eggNOG; KOG3150; Eukaryota.
DR HOGENOM; CLU_075672_0_0_1; -.
DR InParanoid; Q9SD42; -.
DR OMA; SRFPYCI; -.
DR OrthoDB; 1452247at2759; -.
DR PhylomeDB; Q9SD42; -.
DR PRO; PR:Q9SD42; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SD42; baseline and differential.
DR Genevisible; Q9SD42; AT.
DR GO; GO:0005783; C:endoplasmic reticulum; IDA:TAIR.
DR GO; GO:0005794; C:Golgi apparatus; IDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0023056; P:positive regulation of signaling; IGI:TAIR.
DR GO; GO:0010104; P:regulation of ethylene-activated signaling pathway; IBA:GO_Central.
DR GO; GO:0009723; P:response to ethylene; IMP:TAIR.
DR InterPro; IPR008496; TMEM222/RTE1.
DR PANTHER; PTHR20921; PTHR20921; 1.
DR Pfam; PF05608; DUF778; 2.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..231
FT /note="Protein RTE1-HOMOLOG"
FT /id="PRO_0000414065"
FT TRANSMEM 33..53
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 180..200
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 201..221
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 92..119
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 103..119
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 231 AA; 26161 MW; F6F2B70F09CCFB85 CRC64;
MGETATDSEH RMMIGLSDPM KIDPKRDRFP CCIVWTPLPF ISWLVPFIGH VGICREDGVI
LDFAGPNFVC VDNFAFGAVS RYIQINKEME SSRSSSSGMF NGERRYEQEE DSHEKEPTWD
DALRKSTQEY QHHSYNILTC NCHSFVANNL NRLSIKSGGW NVVNLATLVL FKGRWVNKTA
IVKSLLPPLI VYTIGILLGG WTFIASCSIL VVLLTGWFII GTYCFKKLIQ L
