RTNLK_ARATH
ID RTNLK_ARATH Reviewed; 200 AA.
AC Q9LT71; Q8LAT8;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 101.
DE RecName: Full=Reticulon-like protein B11;
DE Short=AtRTNLB11;
GN Name=RTNLB11; OrderedLocusNames=At3g19460; ORFNames=MLD14.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17604024; DOI=10.1016/j.febslet.2007.06.032;
RA Nziengui H., Bouhidel K., Pillon D., Der C., Marty F., Schoefs B.;
RT "Reticulon-like proteins in Arabidopsis thaliana: structural organization
RT and ER localization.";
RL FEBS Lett. 581:3356-3362(2007).
CC -!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
CC {ECO:0000250|UniProtKB:Q9SH59}; Multi-pass membrane protein
CC {ECO:0000255}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9LT71-1; Sequence=Displayed;
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DR EMBL; AB025624; BAB02471.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76242.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM63353.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM63354.1; -; Genomic_DNA.
DR EMBL; AK117258; BAC41933.1; -; mRNA.
DR EMBL; BT005221; AAO63285.1; -; mRNA.
DR EMBL; AY087614; AAM65155.1; -; mRNA.
DR RefSeq; NP_001325445.1; NM_001338398.1. [Q9LT71-1]
DR RefSeq; NP_001325446.1; NM_001338399.1. [Q9LT71-1]
DR RefSeq; NP_566635.1; NM_112833.4. [Q9LT71-1]
DR AlphaFoldDB; Q9LT71; -.
DR SMR; Q9LT71; -.
DR BioGRID; 6813; 6.
DR IntAct; Q9LT71; 6.
DR EnsemblPlants; AT3G19460.1; AT3G19460.1; AT3G19460. [Q9LT71-1]
DR EnsemblPlants; AT3G19460.4; AT3G19460.4; AT3G19460. [Q9LT71-1]
DR EnsemblPlants; AT3G19460.5; AT3G19460.5; AT3G19460. [Q9LT71-1]
DR GeneID; 821480; -.
DR Gramene; AT3G19460.1; AT3G19460.1; AT3G19460. [Q9LT71-1]
DR Gramene; AT3G19460.4; AT3G19460.4; AT3G19460. [Q9LT71-1]
DR Gramene; AT3G19460.5; AT3G19460.5; AT3G19460. [Q9LT71-1]
DR KEGG; ath:AT3G19460; -.
DR Araport; AT3G19460; -.
DR HOGENOM; CLU_066344_0_2_1; -.
DR InParanoid; Q9LT71; -.
DR OMA; KYQDHVD; -.
DR PhylomeDB; Q9LT71; -.
DR PRO; PR:Q9LT71; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LT71; baseline and differential.
DR Genevisible; Q9LT71; AT.
DR GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009617; P:response to bacterium; IEA:InterPro.
DR InterPro; IPR003388; Reticulon.
DR InterPro; IPR045064; Reticulon-like_plant.
DR PANTHER; PTHR10994; PTHR10994; 1.
DR Pfam; PF02453; Reticulon; 1.
DR PROSITE; PS50845; RETICULON; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Endoplasmic reticulum; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..200
FT /note="Reticulon-like protein B11"
FT /id="PRO_0000371292"
FT TRANSMEM 33..53
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 54..74
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 143..163
FT /note="Helical"
FT /evidence="ECO:0000255"
FT DOMAIN 22..200
FT /note="Reticulon"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00170"
FT CONFLICT 68
FT /note="A -> P (in Ref. 5; AAM65155)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 200 AA; 22420 MW; 4CFFBADA80C620DB CRC64;
MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS
NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA ADDLRVWINY VLSIASDITI
ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK
FVRNISRKFP LPINKEKKHQ
