RVE6_ARATH
ID RVE6_ARATH Reviewed; 331 AA.
AC Q8H0W3; Q8LAP4; Q9LTF1;
DT 22-JAN-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 25-MAY-2022, entry version 141.
DE RecName: Full=Protein REVEILLE 6;
GN Name=RVE6; OrderedLocusNames=At5g52660; ORFNames=F6N7.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RA Qu L., Gu H.;
RT "The MYB transcription factor family in Arabidopsis: a genome-wide cloning
RT and expression pattern analysis.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
RA Schmied K.C., Merkle T.;
RT "A small family of LHY-CCA1-like (LCL) MYB1R transcription factors:
RT potential co-regulators of the circadian oscillator.";
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19805390; DOI=10.1073/pnas.0813035106;
RA Rawat R., Schwartz J., Jones M.A., Sairanen I., Cheng Y., Andersson C.R.,
RA Zhao Y., Ljung K., Harmer S.L.;
RT "REVEILLE1, a Myb-like transcription factor, integrates the circadian clock
RT and auxin pathways.";
RL Proc. Natl. Acad. Sci. U.S.A. 106:16883-16888(2009).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q8H0W3-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q8H0W3-2; Sequence=VSP_053510;
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA98084.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY550303; AAS58514.1; -; mRNA.
DR EMBL; AJ937210; CAI77451.1; -; mRNA.
DR EMBL; AB025606; BAA98084.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED96246.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96247.1; -; Genomic_DNA.
DR EMBL; BT002002; AAN72013.1; -; mRNA.
DR EMBL; BT025882; ABF85784.1; -; mRNA.
DR EMBL; AY087690; AAM65227.1; -; mRNA.
DR RefSeq; NP_568776.2; NM_124644.5. [Q8H0W3-1]
DR RefSeq; NP_851177.1; NM_180846.2. [Q8H0W3-2]
DR AlphaFoldDB; Q8H0W3; -.
DR SMR; Q8H0W3; -.
DR BioGRID; 20588; 2.
DR IntAct; Q8H0W3; 2.
DR STRING; 3702.AT5G52660.2; -.
DR PaxDb; Q8H0W3; -.
DR PRIDE; Q8H0W3; -.
DR ProteomicsDB; 226679; -. [Q8H0W3-1]
DR EnsemblPlants; AT5G52660.1; AT5G52660.1; AT5G52660. [Q8H0W3-2]
DR EnsemblPlants; AT5G52660.2; AT5G52660.2; AT5G52660. [Q8H0W3-1]
DR GeneID; 835343; -.
DR Gramene; AT5G52660.1; AT5G52660.1; AT5G52660. [Q8H0W3-2]
DR Gramene; AT5G52660.2; AT5G52660.2; AT5G52660. [Q8H0W3-1]
DR KEGG; ath:AT5G52660; -.
DR Araport; AT5G52660; -.
DR TAIR; locus:2149589; AT5G52660.
DR eggNOG; KOG0724; Eukaryota.
DR InParanoid; Q8H0W3; -.
DR OMA; YPQKAQK; -.
DR OrthoDB; 1109519at2759; -.
DR PhylomeDB; Q8H0W3; -.
DR PRO; PR:Q8H0W3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8H0W3; baseline and differential.
DR Genevisible; Q8H0W3; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0042752; P:regulation of circadian rhythm; IGI:TAIR.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..331
FT /note="Protein REVEILLE 6"
FT /id="PRO_0000424839"
FT DOMAIN 67..121
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 94..117
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 122..166
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 203..237
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 309..331
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 150..166
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 203..223
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 206
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.2, ECO:0000303|Ref.7"
FT /id="VSP_053510"
SQ SEQUENCE 331 AA; 36265 MW; 179C460B6A7C3624 CRC64;
MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK
KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF IGSKTVIQIR SHAQKYFLKV
QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM
TSPTTAAAAP WTNNAQTISF TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL
RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T
