RVE7_ARATH
ID RVE7_ARATH Reviewed; 372 AA.
AC B3H5A8; Q8VZP5; Q9LPQ1;
DT 22-JAN-2014, integrated into UniProtKB/Swiss-Prot.
DT 22-JUL-2008, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=Protein REVEILLE 7;
DE AltName: Full=Early-phytochrome-responsive 1;
DE AltName: Full=MYB-related transcription factor EPR1;
GN Name=RVE7; Synonyms=EPR1; OrderedLocusNames=At1g18330; ORFNames=F15H18.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), FUNCTION, INDUCTION BY LIGHT, AND
RP SUBCELLULAR LOCATION.
RC STRAIN=cv. Landsberg erecta;
RX PubMed=14523250; DOI=10.1105/tpc014217;
RA Kuno N., Moeller S.G., Shinomura T., Xu X., Chua N.H., Furuya M.;
RT "The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a
RT slave circadian oscillator in Arabidopsis.";
RL Plant Cell 15:2476-2488(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
RA Qu L., Gu H.;
RT "The MYB transcription factor family in Arabidopsis: a genome-wide cloning
RT and expression pattern analysis.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP INDUCTION, DISRUPTION PHENOTYPE, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19805390; DOI=10.1073/pnas.0813035106;
RA Rawat R., Schwartz J., Jones M.A., Sairanen I., Cheng Y., Andersson C.R.,
RA Zhao Y., Ljung K., Harmer S.L.;
RT "REVEILLE1, a Myb-like transcription factor, integrates the circadian clock
RT and auxin pathways.";
RL Proc. Natl. Acad. Sci. U.S.A. 106:16883-16888(2009).
CC -!- FUNCTION: Transcription factor involved in phytochrome A-mediated
CC cotyledon opening. Controlled by the central oscillator mediated by LHY
CC and CCA1. Part of a regulatory circadian feedback loop. Regulates its
CC own expression. {ECO:0000269|PubMed:14523250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625,
CC ECO:0000269|PubMed:14523250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=B3H5A8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=B3H5A8-2; Sequence=VSP_053511;
CC -!- INDUCTION: Circadian-regulation. Peak of transcript abundance near
CC subjective dawn. Up-regulated transiently by red light and far red
CC light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
CC -!- DISRUPTION PHENOTYPE: No effect on the regulation of core clock
CC associated genes or on the hypocotyl length. Rve1, rve2 and rve7 triple
CC mutant has no alteration in the period or phase of the clock.
CC {ECO:0000269|PubMed:19805390}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF25987.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB115696; BAC98462.1; -; mRNA.
DR EMBL; AC013354; AAF25987.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE29702.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29703.1; -; Genomic_DNA.
DR EMBL; AY063952; AAL36308.1; -; mRNA.
DR EMBL; AY114070; AAM45118.1; -; mRNA.
DR EMBL; AY550299; AAS58510.1; -; mRNA.
DR RefSeq; NP_001117304.1; NM_001123832.2. [B3H5A8-1]
DR RefSeq; NP_173269.1; NM_101691.9. [B3H5A8-2]
DR AlphaFoldDB; B3H5A8; -.
DR SMR; B3H5A8; -.
DR BioGRID; 23652; 9.
DR IntAct; B3H5A8; 1.
DR STRING; 3702.AT1G18330.2; -.
DR PaxDb; B3H5A8; -.
DR PRIDE; B3H5A8; -.
DR EnsemblPlants; AT1G18330.1; AT1G18330.1; AT1G18330. [B3H5A8-2]
DR EnsemblPlants; AT1G18330.2; AT1G18330.2; AT1G18330. [B3H5A8-1]
DR GeneID; 838413; -.
DR Gramene; AT1G18330.1; AT1G18330.1; AT1G18330. [B3H5A8-2]
DR Gramene; AT1G18330.2; AT1G18330.2; AT1G18330. [B3H5A8-1]
DR KEGG; ath:AT1G18330; -.
DR Araport; AT1G18330; -.
DR TAIR; locus:2014114; AT1G18330.
DR eggNOG; KOG0724; Eukaryota.
DR OMA; EGTTNHE; -.
DR OrthoDB; 1118093at2759; -.
DR PhylomeDB; B3H5A8; -.
DR PRO; PR:B3H5A8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; B3H5A8; baseline and differential.
DR Genevisible; B3H5A8; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0007623; P:circadian rhythm; IEP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Biological rhythms; DNA-binding; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..372
FT /note="Protein REVEILLE 7"
FT /id="PRO_0000424840"
FT DOMAIN 71..125
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 98..121
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 124..204
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 167..204
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..26
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14523250,
FT ECO:0000303|PubMed:14593172, ECO:0000303|Ref.5"
FT /id="VSP_053511"
SQ SEQUENCE 372 AA; 41542 MW; 87CCB9A2E000198D CRC64;
MLCFVRFQAG FVRIIVAARK RFRYFLMAAE DRSEELSSNV ENGSCNSNEG INPETSSHWI
ENVVKVRKPY TVTKQREKWS EEEHDRFLEA IKLYGRGWRQ IQEHIGTKTA VQIRSHAQKF
FSKMAQEADS RSEGSVKAIV IPPPRPKRKP AHPYPRKSPV PYTQSPPPNL SAMEKGTKSP
TSVLSSFGSE DQVNRCSSPN SCTSDIQSIG ATSIDKKNNY TTSKQPFKDD SDIGSTPISS
ITLFGKIVLV AEESHKPSSY NDDDLKQMTC QENHYSGMLV DTNLSLGVWE TFCTGSNAFG
SVTEASENLE KSAEPISSSW KRLSSLEKQG SCNPVNASGF RPYKRCLSER EVTSSLTLVA
SDEKKSQRAR IC
