S1FA2_ARATH
ID S1FA2_ARATH Reviewed; 76 AA.
AC Q42337; Q9ZQC9;
DT 13-SEP-2004, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 2.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=DNA-binding protein S1FA2;
GN Name=S1FA2; OrderedLocusNames=At2g37120; ORFNames=T2N18.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=8580968; DOI=10.1046/j.1365-313x.1996.09010101.x;
RA Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C.,
RA Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R.,
RA Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J.,
RA Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D.,
RA Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P.,
RA Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.;
RT "Further progress towards a catalogue of all Arabidopsis genes: analysis of
RT a set of 5000 non-redundant ESTs.";
RL Plant J. 9:101-124(1996).
CC -!- FUNCTION: DNA-binding protein that specifically recognizes a negative
CC element (S1F) within the RPS1 promoter. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the S1FA transcription factor family.
CC {ECO:0000305}.
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DR EMBL; AC006260; AAD18147.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09353.1; -; Genomic_DNA.
DR EMBL; AF372892; AAK49608.1; -; mRNA.
DR EMBL; BT002669; AAO11585.1; -; mRNA.
DR EMBL; AY085439; AAM62666.1; -; mRNA.
DR EMBL; F19912; CAA23370.1; -; mRNA.
DR PIR; G84788; G84788.
DR RefSeq; NP_565859.1; NM_129268.4.
DR AlphaFoldDB; Q42337; -.
DR SMR; Q42337; -.
DR BioGRID; 3632; 7.
DR IntAct; Q42337; 6.
DR STRING; 3702.AT2G37120.1; -.
DR PaxDb; Q42337; -.
DR PRIDE; Q42337; -.
DR ProteomicsDB; 228045; -.
DR EnsemblPlants; AT2G37120.1; AT2G37120.1; AT2G37120.
DR GeneID; 818288; -.
DR Gramene; AT2G37120.1; AT2G37120.1; AT2G37120.
DR KEGG; ath:AT2G37120; -.
DR Araport; AT2G37120; -.
DR TAIR; locus:2061805; AT2G37120.
DR eggNOG; ENOG502S3X9; Eukaryota.
DR HOGENOM; CLU_172811_0_0_1; -.
DR InParanoid; Q42337; -.
DR OMA; YMYAQKN; -.
DR PRO; PR:Q42337; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q42337; baseline and differential.
DR Genevisible; Q42337; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR006779; S1FA_DNA-bd.
DR PANTHER; PTHR35298; PTHR35298; 1.
DR Pfam; PF04689; S1FA; 1.
PE 3: Inferred from homology;
KW DNA-binding; Nucleus; Reference proteome; Repressor; Transcription;
KW Transcription regulation.
FT CHAIN 1..76
FT /note="DNA-binding protein S1FA2"
FT /id="PRO_0000132714"
FT REGION 51..76
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 50..55
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT COMPBIAS 52..66
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 70
FT /note="G -> R (in Ref. 5; CAA23370)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 76 AA; 8221 MW; 4CF150686EEE2D73 CRC64;
MSSDGSAGKA VVEAKGLNPG LIVLLVIGGL LVTFLIANYV MYMYAQKNLP PRKKKPLSKK
KLKREKLKQG VPVPGE
