SALT_ORYSJ
ID SALT_ORYSJ Reviewed; 145 AA.
AC Q0JMY8; O04184; O64441; P24120; Q7F204;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 81.
DE RecName: Full=Salt stress-induced protein;
DE Short=Salt protein;
DE AltName: Full=Protein lectin-like;
DE AltName: Full=Protein mannose-binding lectin;
GN Name=SALT; Synonyms=ML; OrderedLocusNames=Os01g0348900, LOC_Os01g24710;
GN ORFNames=B1051E10.18, P0440D10.39;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Tainung 67; TISSUE=Leaf;
RX PubMed=11432928; DOI=10.1093/jexbot/52.358.1117;
RA Lee R.-H., Wang C.-H., Huang L.-T., Chen S.-C.G.;
RT "Leaf senescence in rice plants: cloning and characterization of senescence
RT up-regulated genes.";
RL J. Exp. Bot. 52:1117-1121(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nakdong; TISSUE=Leaf;
RA Lee J.S., Lee M.C., Eun M.Y.;
RT "Identification of salt-stress induced gene from rice by differential
RT display.";
RL Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Aichi asahi;
RA Teraoka T., Hirano K.;
RT "Cloning and Sequence of the mannosess-binding rice lectin.";
RL Submitted (MAR-1998) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Aichi asahi;
RA Peng Y.L., Qin Q.M., Zhang Q., Li H.;
RT "A rice lectin-like protein induced by Magnaporthe grisea.";
RL Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [8]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- TISSUE SPECIFICITY: Sheaths and roots from mature plants and seedlings.
CC -!- INDUCTION: In response to salt and related osmotic stresses.
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DR EMBL; AF285163; AAK82986.1; -; mRNA.
DR EMBL; AF001395; AAB53810.1; -; mRNA.
DR EMBL; AB012605; BAA25369.1; -; Genomic_DNA.
DR EMBL; AF435970; AAL30827.1; -; mRNA.
DR EMBL; AP003764; BAB93403.1; -; Genomic_DNA.
DR EMBL; AP003852; BAB63898.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04890.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS72018.1; -; Genomic_DNA.
DR RefSeq; XP_015622103.1; XM_015766617.1.
DR PDB; 5XFH; X-ray; 1.90 A; A/B=1-145.
DR PDBsum; 5XFH; -.
DR AlphaFoldDB; Q0JMY8; -.
DR SMR; Q0JMY8; -.
DR STRING; 4530.OS01T0348900-01; -.
DR UniLectin; Q0JMY8; -.
DR PaxDb; Q0JMY8; -.
DR PRIDE; Q0JMY8; -.
DR EnsemblPlants; Os01t0348900-01; Os01t0348900-01; Os01g0348900.
DR GeneID; 4326471; -.
DR Gramene; Os01t0348900-01; Os01t0348900-01; Os01g0348900.
DR KEGG; osa:4326471; -.
DR HOGENOM; CLU_078923_4_0_1; -.
DR InParanoid; Q0JMY8; -.
DR OMA; KLIWITI; -.
DR OrthoDB; 1581784at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q0JMY8; baseline and differential.
DR Genevisible; Q0JMY8; OS.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR CDD; cd09612; Jacalin; 1.
DR Gene3D; 2.100.10.30; -; 1.
DR InterPro; IPR001229; Jacalin-like_lectin_dom.
DR InterPro; IPR033734; Jacalin-like_lectin_dom_plant.
DR InterPro; IPR036404; Jacalin-like_lectin_dom_sf.
DR Pfam; PF01419; Jacalin; 1.
DR SMART; SM00915; Jacalin; 1.
DR SUPFAM; SSF51101; SSF51101; 1.
DR PROSITE; PS51752; JACALIN_LECTIN; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Lectin; Reference proteome; Repeat.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000250"
FT CHAIN 2..145
FT /note="Salt stress-induced protein"
FT /id="PRO_0000097567"
FT DOMAIN 3..145
FT /note="Jacalin-type lectin"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT REPEAT 6..15
FT /note="1"
FT REPEAT 54..64
FT /note="2"
FT REGION 6..64
FT /note="2 X approximate repeats, Gly-rich"
FT CONFLICT 62
FT /note="G -> S (in Ref. 2; AAB53810)"
FT /evidence="ECO:0000305"
FT STRAND 4..10
FT /evidence="ECO:0007829|PDB:5XFH"
FT STRAND 14..17
FT /evidence="ECO:0007829|PDB:5XFH"
FT STRAND 23..46
FT /evidence="ECO:0007829|PDB:5XFH"
FT STRAND 51..58
FT /evidence="ECO:0007829|PDB:5XFH"
FT STRAND 63..68
FT /evidence="ECO:0007829|PDB:5XFH"
FT STRAND 75..85
FT /evidence="ECO:0007829|PDB:5XFH"
FT STRAND 88..99
FT /evidence="ECO:0007829|PDB:5XFH"
FT STRAND 104..108
FT /evidence="ECO:0007829|PDB:5XFH"
FT STRAND 112..118
FT /evidence="ECO:0007829|PDB:5XFH"
FT STRAND 124..144
FT /evidence="ECO:0007829|PDB:5XFH"
SQ SEQUENCE 145 AA; 15172 MW; 01AD2ED050D0C862 CRC64;
MTLVKIGPWG GNGGSAQDIS VPPKKLLGVT IYSSDAIRSI AFNYIGVDGQ EYAIGPWGGG
EGTSTEIKLG SSEQIKEISG THGPVYDLAD IVTYLKIVTS ANNTYEAGVP NGKEFSIPLQ
DSGHVVGFFG RSGTLIDAIG IYVHP
