SAU41_ARATH
ID SAU41_ARATH Reviewed; 147 AA.
AC Q9SA49;
DT 27-MAY-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Auxin-responsive protein SAUR41 {ECO:0000305};
DE AltName: Full=Protein SMALL AUXIN UP RNA 41 {ECO:0000303|PubMed:12036261};
GN Name=SAUR41 {ECO:0000303|PubMed:12036261};
GN OrderedLocusNames=At1g16510 {ECO:0000312|Araport:AT1G16510};
GN ORFNames=F3O9.31 {ECO:0000312|EMBL:AAD34702.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12036261; DOI=10.1023/a:1015207114117;
RA Hagen G., Guilfoyle T.J.;
RT "Auxin-responsive gene expression: genes, promoters and regulatory
RT factors.";
RL Plant Mol. Biol. 49:373-385(2002).
RN [7]
RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE,
RP AND INDUCTION BY AUXIN.
RX PubMed=23396598; DOI=10.1093/pcp/pct028;
RA Kong Y., Zhu Y., Gao C., She W., Lin W., Chen Y., Han N., Bian H., Zhu M.,
RA Wang J.;
RT "Tissue-specific expression of SMALL AUXIN UP RNA41 differentially
RT regulates cell expansion and root meristem patterning in Arabidopsis.";
RL Plant Cell Physiol. 54:609-621(2013).
CC -!- FUNCTION: Plays a role in the regulation of cell expansion, root
CC meristem patterning and auxin transport. {ECO:0000269|PubMed:23396598}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:23396598}.
CC -!- TISSUE SPECIFICITY: Specifically expressed in the quiescent center and
CC cortex or endodermis initials of root stem niches. Expressed in
CC vascular tissues from hypocotyls, petioles and cotyledons.
CC {ECO:0000269|PubMed:23396598}.
CC -!- DEVELOPMENTAL STAGE: During lateral root development, expressed in the
CC prospective quiescent center of lateral root primordia. In newly formed
CC lateral roots, strongly expressed in the quiescent center and initial
CC cells and weakly expressed in the endodermis.
CC {ECO:0000269|PubMed:23396598}.
CC -!- INDUCTION: By auxin. {ECO:0000269|PubMed:23396598}.
CC -!- MISCELLANEOUS: Plants over-expressing SAUR41 display pleiotropic auxin-
CC related phenotypes. These phenotypes include elongated hypocotyls,
CC increased length of primary roots, increased numbers of lateral roots,
CC increased vegetative biomass, twisted inflorescence stems, overexpanded
CC petals, reduced seed setting and increased basipetal auxin transport in
CC hypocotyls. {ECO:0000269|PubMed:23396598}.
CC -!- SIMILARITY: Belongs to the ARG7 family. {ECO:0000305}.
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DR EMBL; AC006341; AAD34702.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29463.1; -; Genomic_DNA.
DR EMBL; AK117413; BAC42079.1; -; mRNA.
DR EMBL; AF348577; AAK15548.1; -; mRNA.
DR EMBL; BT003061; AAO23626.1; -; mRNA.
DR EMBL; AK227586; BAE99579.1; -; mRNA.
DR PIR; F86300; F86300.
DR RefSeq; NP_173100.1; NM_101516.4.
DR AlphaFoldDB; Q9SA49; -.
DR STRING; 3702.AT1G16510.1; -.
DR PaxDb; Q9SA49; -.
DR PRIDE; Q9SA49; -.
DR EnsemblPlants; AT1G16510.1; AT1G16510.1; AT1G16510.
DR GeneID; 838221; -.
DR Gramene; AT1G16510.1; AT1G16510.1; AT1G16510.
DR KEGG; ath:AT1G16510; -.
DR Araport; AT1G16510; -.
DR TAIR; locus:2032915; AT1G16510.
DR eggNOG; ENOG502S1QJ; Eukaryota.
DR HOGENOM; CLU_098106_7_1_1; -.
DR InParanoid; Q9SA49; -.
DR OMA; MNHPIFV; -.
DR OrthoDB; 1455611at2759; -.
DR PhylomeDB; Q9SA49; -.
DR PRO; PR:Q9SA49; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SA49; baseline and differential.
DR Genevisible; Q9SA49; AT.
DR GO; GO:0005737; C:cytoplasm; IDA:TAIR.
DR GO; GO:0060918; P:auxin transport; IMP:TAIR.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0009958; P:positive gravitropism; IMP:TAIR.
DR GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR GO; GO:0090057; P:root radial pattern formation; IMP:TAIR.
DR InterPro; IPR003676; SAUR_fam.
DR PANTHER; PTHR31374; PTHR31374; 1.
DR Pfam; PF02519; Auxin_inducible; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Cytoplasm; Developmental protein;
KW Growth regulation; Reference proteome.
FT CHAIN 1..147
FT /note="Auxin-responsive protein SAUR41"
FT /id="PRO_0000433070"
SQ SEQUENCE 147 AA; 16479 MW; A0BD859FDA8643AC CRC64;
MKHLIRRLSR VADSSSEFSI RRSTSSFRNR RGHHRLHAPP PPWSICPARR VNTVPAGHVP
VYVGEEMERF VVSAELMNHP IFVGLLNRSA QEYGYAQKGV LHIPCHVIVF ERVVETLRLG
GFEGSGDLEN LVASLLSGDE LIPETTE
