SCL23_ARATH
ID SCL23_ARATH Reviewed; 405 AA.
AC Q9FHZ1;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=Scarecrow-like protein 23;
DE Short=AtSCL23;
DE AltName: Full=GRAS family protein 28;
DE Short=AtGRAS-28;
GN Name=SCL23; OrderedLocusNames=At5g41920; ORFNames=MJC20.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10470850; DOI=10.1093/dnares/6.3.183;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Kotani H.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence
RT features of the regions of 1,011,550 bp covered by seventeen P1 and TAC
RT clones.";
RL DNA Res. 6:183-195(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Wu S.Y., De Los Reyes C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15316287; DOI=10.1023/b:plan.0000038256.89809.57;
RA Tian C., Wan P., Sun S., Li J., Chen M.;
RT "Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.";
RL Plant Mol. Biol. 54:519-532(2004).
RN [5]
RP SUBCELLULAR LOCATION, AND INTERACTION WITH SHR.
RX PubMed=18500650; DOI=10.1007/s11103-008-9345-1;
RA Lee M.-H., Kim B., Song S.-K., Heo J.-O., Yu N.-I., Lee S.A., Kim M.,
RA Kim D.G., Sohn S.O., Lim C.E., Chang K.S., Lee M.M., Lim J.;
RT "Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.";
RL Plant Mol. Biol. 67:659-670(2008).
CC -!- FUNCTION: Probable transcription factor involved in plant development.
CC {ECO:0000250}.
CC -!- SUBUNIT: Interacts with SHR. {ECO:0000269|PubMed:18500650}.
CC -!- INTERACTION:
CC Q9FHZ1; P29383: AGL3; NbExp=3; IntAct=EBI-1238460, EBI-622036;
CC Q9FHZ1; Q9FLB8: At5g05360; NbExp=3; IntAct=EBI-1238460, EBI-25521815;
CC Q9FHZ1; Q8GZ13: BEE1; NbExp=5; IntAct=EBI-1238460, EBI-4440101;
CC Q9FHZ1; O04541: F20P5.23; NbExp=8; IntAct=EBI-1238460, EBI-15191755;
CC Q9FHZ1; Q9FX36: MYB54; NbExp=3; IntAct=EBI-1238460, EBI-25511270;
CC Q9FHZ1; O48723: PLP2; NbExp=5; IntAct=EBI-1238460, EBI-4443426;
CC Q9FHZ1; Q9SLH3: RGA; NbExp=3; IntAct=EBI-1238460, EBI-963624;
CC Q9FHZ1; Q9LMA8: TIFY10A; NbExp=4; IntAct=EBI-1238460, EBI-1388539;
CC Q9FHZ1; Q84MB2: TIFY8; NbExp=8; IntAct=EBI-1238460, EBI-4426557;
CC Q9FHZ1; Q5CCK4: VAL2; NbExp=5; IntAct=EBI-1238460, EBI-15193683;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:18500650}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex,
CC leaves and flowers.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
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DR EMBL; AB017067; BAB08425.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94744.1; -; Genomic_DNA.
DR EMBL; BT029760; ABM06030.1; -; mRNA.
DR RefSeq; NP_199007.1; NM_123557.4.
DR AlphaFoldDB; Q9FHZ1; -.
DR SMR; Q9FHZ1; -.
DR BioGRID; 19448; 21.
DR IntAct; Q9FHZ1; 23.
DR STRING; 3702.AT5G41920.1; -.
DR PaxDb; Q9FHZ1; -.
DR PRIDE; Q9FHZ1; -.
DR ProteomicsDB; 232806; -.
DR DNASU; 834197; -.
DR EnsemblPlants; AT5G41920.1; AT5G41920.1; AT5G41920.
DR GeneID; 834197; -.
DR Gramene; AT5G41920.1; AT5G41920.1; AT5G41920.
DR KEGG; ath:AT5G41920; -.
DR Araport; AT5G41920; -.
DR TAIR; locus:2165685; AT5G41920.
DR eggNOG; ENOG502R062; Eukaryota.
DR HOGENOM; CLU_011924_0_2_1; -.
DR InParanoid; Q9FHZ1; -.
DR OMA; SSMKTKR; -.
DR OrthoDB; 772613at2759; -.
DR PhylomeDB; Q9FHZ1; -.
DR PRO; PR:Q9FHZ1; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FHZ1; baseline and differential.
DR Genevisible; Q9FHZ1; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0090610; P:bundle sheath cell fate specification; IMP:TAIR.
DR GO; GO:0001714; P:endodermal cell fate specification; IGI:CACAO.
DR GO; GO:0048366; P:leaf development; IMP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 1: Evidence at protein level;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..405
FT /note="Scarecrow-like protein 23"
FT /id="PRO_0000350862"
FT DOMAIN 31..400
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 38..102
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 121..186
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 196..228
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 238..327
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 330..400
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 45..49
FT /note="LxCxE motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 152..156
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
SQ SEQUENCE 405 AA; 44893 MW; 6809D9EEBEB0A8F6 CRC64;
MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS
TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA CSPLSEKPLT VVQSQKIFSA
LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR
SIRITGFGSS SDLLASTGRR LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV
HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA
TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK SQPFD
