SCL29_ARATH
ID SCL29_ARATH Reviewed; 510 AA.
AC Q9LRW3;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Scarecrow-like protein 29;
DE Short=AtSCL29;
DE AltName: Full=GRAS family protein 16;
DE Short=AtGRAS-16;
GN Name=SCL29; OrderedLocusNames=At3g13840; ORFNames=MCP4.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15316287; DOI=10.1023/b:plan.0000038256.89809.57;
RA Tian C., Wan P., Sun S., Li J., Chen M.;
RT "Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.";
RL Plant Mol. Biol. 54:519-532(2004).
RN [4]
RP GENE FAMILY, AND TISSUE SPECIFICITY.
RX PubMed=18500650; DOI=10.1007/s11103-008-9345-1;
RA Lee M.-H., Kim B., Song S.-K., Heo J.-O., Yu N.-I., Lee S.A., Kim M.,
RA Kim D.G., Sohn S.O., Lim C.E., Chang K.S., Lee M.M., Lim J.;
RT "Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.";
RL Plant Mol. Biol. 67:659-670(2008).
CC -!- FUNCTION: Probable transcription factor involved in plant development.
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, roots and flowers.
CC {ECO:0000269|PubMed:18500650}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
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DR EMBL; AB028610; BAB02908.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75423.1; -; Genomic_DNA.
DR RefSeq; NP_188000.1; NM_112237.2.
DR AlphaFoldDB; Q9LRW3; -.
DR SMR; Q9LRW3; -.
DR STRING; 3702.AT3G13840.1; -.
DR iPTMnet; Q9LRW3; -.
DR PaxDb; Q9LRW3; -.
DR PRIDE; Q9LRW3; -.
DR EnsemblPlants; AT3G13840.1; AT3G13840.1; AT3G13840.
DR GeneID; 820596; -.
DR Gramene; AT3G13840.1; AT3G13840.1; AT3G13840.
DR KEGG; ath:AT3G13840; -.
DR Araport; AT3G13840; -.
DR TAIR; locus:2087994; AT3G13840.
DR eggNOG; ENOG502QSHA; Eukaryota.
DR HOGENOM; CLU_011924_5_1_1; -.
DR InParanoid; Q9LRW3; -.
DR OMA; TEPRFFQ; -.
DR OrthoDB; 454341at2759; -.
DR PhylomeDB; Q9LRW3; -.
DR PRO; PR:Q9LRW3; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LRW3; baseline and differential.
DR Genevisible; Q9LRW3; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR030015; SCL29/NSP1.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR PANTHER; PTHR31636:SF243; PTHR31636:SF243; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..510
FT /note="Scarecrow-like protein 29"
FT /id="PRO_0000350866"
FT DOMAIN 136..510
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 90..142
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 143..205
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 224..294
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 312..337
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 347..435
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 438..510
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 259..263
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COMPBIAS 101..120
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 127..142
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 510 AA; 57181 MW; 559F8C997862866F CRC64;
MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI
QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN DQSRKRSHDG FLEAQQVKKS
ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD
ANRRLAAFGL RALQHHLSSS SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM
ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH
SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF SKKLEYVWKF LDSTSSGFKE
ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD
NNWEIRMEDG DTFAGLMWKG EAVSFCSLWK
