SCL31_ARATH
ID SCL31_ARATH Reviewed; 695 AA.
AC Q3EDH0; C0SUT7; F4HQP5; Q9LNX6;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 14-DEC-2011, sequence version 3.
DT 25-MAY-2022, entry version 97.
DE RecName: Full=Scarecrow-like protein 31;
DE Short=AtSCL31;
DE AltName: Full=GRAS family protein 1;
DE Short=AtGRAS-1;
GN Name=SCL31; OrderedLocusNames=At1g07520; ORFNames=F22G5.41;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 98-301 (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [5]
RP GENE FAMILY.
RX PubMed=15316287; DOI=10.1023/b:plan.0000038256.89809.57;
RA Tian C., Wan P., Sun S., Li J., Chen M.;
RT "Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.";
RL Plant Mol. Biol. 54:519-532(2004).
RN [6]
RP GENE FAMILY, AND TISSUE SPECIFICITY.
RX PubMed=18500650; DOI=10.1007/s11103-008-9345-1;
RA Lee M.-H., Kim B., Song S.-K., Heo J.-O., Yu N.-I., Lee S.A., Kim M.,
RA Kim D.G., Sohn S.O., Lim C.E., Chang K.S., Lee M.M., Lim J.;
RT "Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.";
RL Plant Mol. Biol. 67:659-670(2008).
CC -!- FUNCTION: Probable transcription factor involved in plant development.
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q3EDH0-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q3EDH0-2; Sequence=VSP_042109;
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves
CC and sepals. {ECO:0000269|PubMed:18500650}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79548.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g07520 and At1g07530.; Evidence={ECO:0000305};
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DR EMBL; AC022464; AAF79548.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28138.1; -; Genomic_DNA.
DR EMBL; AB493440; BAH30278.1; -; mRNA.
DR EMBL; BX839686; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T51232; T51232.
DR RefSeq; NP_172232.1; NM_100626.2. [Q3EDH0-1]
DR AlphaFoldDB; Q3EDH0; -.
DR SMR; Q3EDH0; -.
DR STRING; 3702.AT1G07520.1; -.
DR PaxDb; Q3EDH0; -.
DR ProteomicsDB; 232695; -. [Q3EDH0-1]
DR EnsemblPlants; AT1G07520.1; AT1G07520.1; AT1G07520. [Q3EDH0-1]
DR GeneID; 837266; -.
DR Gramene; AT1G07520.1; AT1G07520.1; AT1G07520. [Q3EDH0-1]
DR KEGG; ath:AT1G07520; -.
DR Araport; AT1G07520; -.
DR TAIR; locus:2025032; AT1G07520.
DR eggNOG; ENOG502QSQ6; Eukaryota.
DR HOGENOM; CLU_011924_2_1_1; -.
DR InParanoid; Q3EDH0; -.
DR PRO; PR:Q3EDH0; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q3EDH0; differential.
DR Genevisible; Q3EDH0; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Coiled coil; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..695
FT /note="Scarecrow-like protein 31"
FT /id="PRO_0000350868"
FT DOMAIN 306..693
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 105..136
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 234..260
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 313..377
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 396..461
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 477..509
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 519..614
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 617..693
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COILED 233..266
FT /evidence="ECO:0000255"
FT MOTIF 427..431
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT VAR_SEQ 129..161
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.3"
FT /id="VSP_042109"
FT CONFLICT 150
FT /note="K -> E (in Ref. 4; BX839686)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 695 AA; 79251 MW; 3653399696177DE6 CRC64;
MESNYSGVVN GYDVSFLPTS IPDLGFGVPS SSDFDLRMDQ YYHQPSIWVP DQDHHFSPPA
DEIDSENTLL KYVNQLLMEE SLAEKQSIFY DSLALRQTEE MLQQVISDSQ TQSSIPNNSI
TTSSSSNSGD YSNSSNSSVR IENEVLFDNK HLGDSGVVSF PGSNMLRGGE QFGQPANEIL
VRSMFSDAES VLQFKRGLEE ASKFLPNTDQ WIFNLEPEME RVVPVKVEEG WSAISKTRKN
HHEREEEEDD LEEARRRSKQ FAVNEEDGKL TEMFDKVLLL DGECDPQIIE DGENGSSKAL
VKKGRAKKKS RAVDFRTLLT LCAQSVSAGD KITADDLLRQ IRKQCSPVGD ASQRLAHFFA
NALEARLEGS TGTMIQSYYD SISSKKRTAA QILKSYSVFL SASPFMTLIY FFSNKMILDA
AKDASVLHIV DFGILYGFQW PMFIQHLSKS NPGLRKLRIT GIEIPQHGLR PTERIQDTGR
RLTEYCKRFG VPFEYNAIAS KNWETIKMEE FKIRPNEVLA VNAVLRFKNL RDVIPGEEDC
PRDGFLKLIR DMNPNVFLSS TVNGSFNAPF FTTRFKEALF HYSALFDLFG ATLSKENPER
IHFEGEFYGR EVMNVIACEG VDRVERPETY KQWQVRMIRA GFKQKPVEAE LVQLFREKMK
KWGYHKDFVL DEDSNWFLQG WKGRILFSSS CWVPS
