SCL4_ARATH
ID SCL4_ARATH Reviewed; 584 AA.
AC Q9FL03; Q8W4I8;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Scarecrow-like protein 4;
DE Short=AtSCL4;
DE AltName: Full=GRAS family protein 32;
DE Short=AtGRAS-32;
GN Name=SCL4; OrderedLocusNames=At5g66770; ORFNames=MUD21.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9679202; DOI=10.1093/dnares/5.2.131;
RA Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence
RT features of the regions of 1,381,565 bp covered by twenty one physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:131-145(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15316287; DOI=10.1023/b:plan.0000038256.89809.57;
RA Tian C., Wan P., Sun S., Li J., Chen M.;
RT "Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.";
RL Plant Mol. Biol. 54:519-532(2004).
RN [5]
RP GENE FAMILY, SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
RX PubMed=18500650; DOI=10.1007/s11103-008-9345-1;
RA Lee M.-H., Kim B., Song S.-K., Heo J.-O., Yu N.-I., Lee S.A., Kim M.,
RA Kim D.G., Sohn S.O., Lim C.E., Chang K.S., Lee M.M., Lim J.;
RT "Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.";
RL Plant Mol. Biol. 67:659-670(2008).
CC -!- FUNCTION: Probable transcription factor involved in plant development.
CC {ECO:0000250}.
CC -!- INTERACTION:
CC Q9FL03; Q9SAK5: APL; NbExp=3; IntAct=EBI-1238466, EBI-4437350;
CC Q9FL03; C0SVS4: PHL11; NbExp=4; IntAct=EBI-1238466, EBI-15194203;
CC Q9FL03; Q8LAJ7: PHL3; NbExp=3; IntAct=EBI-1238466, EBI-4443730;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:18500650}.
CC -!- TISSUE SPECIFICITY: Expressed in leaves, sepals, filaments of stamen,
CC and in the central cylinder of the elongation zone in root.
CC {ECO:0000269|PubMed:18500650}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAL32616.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=AAL32616.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AB010700; BAB08619.1; -; Genomic_DNA.
DR EMBL; CP002688; AED98261.1; -; Genomic_DNA.
DR EMBL; AY062538; AAL32616.1; ALT_SEQ; mRNA.
DR EMBL; BT002580; AAO00940.1; -; mRNA.
DR RefSeq; NP_201478.1; NM_126075.5.
DR AlphaFoldDB; Q9FL03; -.
DR SMR; Q9FL03; -.
DR BioGRID; 22052; 11.
DR IntAct; Q9FL03; 10.
DR STRING; 3702.AT5G66770.1; -.
DR PaxDb; Q9FL03; -.
DR PRIDE; Q9FL03; -.
DR ProteomicsDB; 232812; -.
DR EnsemblPlants; AT5G66770.1; AT5G66770.1; AT5G66770.
DR GeneID; 836810; -.
DR Gramene; AT5G66770.1; AT5G66770.1; AT5G66770.
DR KEGG; ath:AT5G66770; -.
DR Araport; AT5G66770; -.
DR TAIR; locus:2174974; AT5G66770.
DR eggNOG; ENOG502QTXA; Eukaryota.
DR HOGENOM; CLU_011924_0_5_1; -.
DR InParanoid; Q9FL03; -.
DR OMA; FSACPNR; -.
DR OrthoDB; 690313at2759; -.
DR PhylomeDB; Q9FL03; -.
DR PRO; PR:Q9FL03; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FL03; baseline and differential.
DR Genevisible; Q9FL03; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 1: Evidence at protein level;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..584
FT /note="Scarecrow-like protein 4"
FT /id="PRO_0000350848"
FT DOMAIN 204..584
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 166..213
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 211..270
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 289..355
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 371..403
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 412..503
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 506..584
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 320..324
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 420..424
FT /note="LXXLL motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COMPBIAS 174..189
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 584 AA; 64587 MW; C591D3AD03663039 CRC64;
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG
SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS DFGGGTGGGE FESDEWMETL
ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW
PPSSPLSIPP LTHESPTKED PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL
QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS
LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN GSSFRVDPDE VLAVNFMLQL
YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP
NLGRDSEERV RVERELFGRR ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY
AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
