SDCG8_DANRE
ID SDCG8_DANRE Reviewed; 701 AA.
AC B8JK76;
DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 03-MAY-2011, sequence version 2.
DT 03-AUG-2022, entry version 74.
DE RecName: Full=Serologically defined colon cancer antigen 8 homolog;
GN Name=Sdccag8; ORFNames=si:dkey-60B15.1;
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen;
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S.,
RA Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N.,
RA Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J.,
RA Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J.,
RA Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D.,
RA McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S.,
RA Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E.,
RA Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A.,
RA Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P.,
RA Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C.,
RA Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C.,
RA Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M.,
RA Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G.,
RA Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F.,
RA Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M.,
RA Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M.,
RA de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C.,
RA Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the human
RT genome.";
RL Nature 496:498-503(2013).
RN [2]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=20835237; DOI=10.1038/ng.662;
RA Otto E.A., Hurd T.W., Airik R., Chaki M., Zhou W., Stoetzel C., Patil S.B.,
RA Levy S., Ghosh A.K., Murga-Zamalloa C.A., van Reeuwijk J., Letteboer S.J.,
RA Sang L., Giles R.H., Liu Q., Coene K.L., Estrada-Cuzcano A., Collin R.W.,
RA McLaughlin H.M., Held S., Kasanuki J.M., Ramaswami G., Conte J., Lopez I.,
RA Washburn J., Macdonald J., Hu J., Yamashita Y., Maher E.R.,
RA Guay-Woodford L.M., Neumann H.P., Obermuller N., Koenekoop R.K.,
RA Bergmann C., Bei X., Lewis R.A., Katsanis N., Lopes V., Williams D.S.,
RA Lyons R.H., Dang C.V., Brito D.A., Dias M.B., Zhang X., Cavalcoli J.D.,
RA Nurnberg G., Nurnberg P., Pierce E.A., Jackson P.K., Antignac C.,
RA Saunier S., Roepman R., Dollfus H., Khanna H., Hildebrandt F.;
RT "Candidate exome capture identifies mutation of SDCCAG8 as the cause of a
RT retinal-renal ciliopathy.";
RL Nat. Genet. 42:840-850(2010).
CC -!- FUNCTION: Plays a role in the establishment of cell polarity and
CC epithelial lumen formation (PubMed:20835237). Also plays an essential
CC role in ciliogenesis and subsequent Hedgehog signaling pathway that
CC requires the presence of intact primary cilia for pathway activation.
CC Mechanistically, interacts with and mediates RABEP2 centrosomal
CC localization which is critical for ciliogenesis (By similarity).
CC {ECO:0000250|UniProtKB:Q86SQ7, ECO:0000269|PubMed:20835237}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, microtubule organizing
CC center, centrosome, centriole {ECO:0000250|UniProtKB:Q86SQ7}.
CC Cytoplasm, cytoskeleton, microtubule organizing center, centrosome
CC {ECO:0000250|UniProtKB:Q86SQ7}. Cytoplasm, cytoskeleton, cilium basal
CC body {ECO:0000250|UniProtKB:Q86SQ7}. Cell junction
CC {ECO:0000250|UniProtKB:Q86SQ7}. Note=Located at the distal ends of both
CC centrioles and colocalizes to centrosomes throughout the cell cycle.
CC {ECO:0000250|UniProtKB:Q86SQ7}.
CC -!- DISRUPTION PHENOTYPE: Morpholino oligonucleotide-mediated gene
CC knockdown causes multiple developmental defects, including abnormal
CC body axis curvature, shortened and broadened tails, kidney cysts at 72
CC hours post fertilization and hydrocephalus.
CC {ECO:0000269|PubMed:20835237}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAX14325.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; CT573119; CAX14325.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CU914440; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_017214440.1; XM_017358951.1.
DR AlphaFoldDB; B8JK76; -.
DR SMR; B8JK76; -.
DR STRING; 7955.ENSDARP00000099835; -.
DR PaxDb; B8JK76; -.
DR PeptideAtlas; B8JK76; -.
DR ZFIN; ZDB-GENE-090312-109; cep170aa.
DR ZFIN; ZDB-GENE-090313-318; sdccag8.
DR eggNOG; ENOG502R5XE; Eukaryota.
DR HOGENOM; CLU_024506_0_0_1; -.
DR InParanoid; B8JK76; -.
DR PhylomeDB; B8JK76; -.
DR TreeFam; TF325472; -.
DR PRO; PR:B8JK76; -.
DR Proteomes; UP000000437; Genome assembly.
DR Proteomes; UP000814640; Unplaced.
DR GO; GO:0070161; C:anchoring junction; IEA:UniProtKB-SubCell.
DR GO; GO:0042995; C:cell projection; IEA:UniProtKB-KW.
DR GO; GO:0005814; C:centriole; IEA:UniProtKB-SubCell.
DR GO; GO:0005813; C:centrosome; IEA:InterPro.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0030030; P:cell projection organization; IEA:UniProtKB-KW.
DR GO; GO:0007098; P:centrosome cycle; IEA:InterPro.
DR GO; GO:0043009; P:chordate embryonic development; IMP:ZFIN.
DR InterPro; IPR031887; SDCCAG8.
DR PANTHER; PTHR34343; PTHR34343; 1.
DR Pfam; PF15964; CCCAP; 1.
PE 3: Inferred from homology;
KW Cell junction; Cell projection; Cilium biogenesis/degradation; Coiled coil;
KW Cytoplasm; Cytoskeleton; Reference proteome.
FT CHAIN 1..701
FT /note="Serologically defined colon cancer antigen 8
FT homolog"
FT /id="PRO_0000407928"
FT REGION 1..67
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 84..114
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 364..387
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 119..173
FT /evidence="ECO:0000255"
FT COILED 203..258
FT /evidence="ECO:0000255"
FT COILED 323..695
FT /evidence="ECO:0000255"
FT COMPBIAS 1..25
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 26..67
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 701 AA; 80437 MW; 59198561C8AE7F9C CRC64;
MKPSLESDEE EELGALQKTL RERANRSIQH LSSMLAGHSS DSETSEPNQQ ELLSSVQQNP
CSPVQQSEAV SQLRSLLQMK TKDANIQSLS PSRRKLAAKR ATDDGSSSQP GVHNLVPIIN
NQSEYIQHLE AEVKFCKEEL LEMKQRVRVV IVENEKLHHE LKAKTIEDTL KEYTFVDSTL
NMEHTAENTL KERLGSVNQA EDHKWRKEME QLKCLYQAQT ETLEAQVVSL KKDLACIQKE
YEESKERLRH KEAMAVAAGT GQRVSGLCLK CAQHEAVLAE THTNVHVQSI ERLTKERDEL
MTVLCSLRAS QTDAQQREWG AYQQVKQAVE MAEEANLEKT RALVQCEHFH NELTRQRERL
ERELASEQDK ISQAREAARS ESKKEREELM QTLSSLSQKV AELQGLLDRG ERDRNSLNSQ
LEEAYKKLTV QETDSSKMCA ELRFLLSQAQ LKKEEAERDV RDISSKLGRQ LELAEQEVQK
LGVELSGYRQ RLEEAQRAEG RARAEAAGLA EGLSRAQRQL HLTRQEKEAS ERCCGEDMAA
LTFQAQRRER ELTQTLQQME AQHEKSVRET DALLSAQNSL IRKLKEECHT LGAKLEELAQ
SSRAEMEQLS LEREHLQESA EKLRGRCEEM EEQCVQHGRM HQRMKQRLQQ LDQHCQASSQ
QVLQLLSRQK QLMQERQQLT EDLHSLKSQV HAGKRMDRLA V