SDG40_ARATH
ID SDG40_ARATH Reviewed; 491 AA.
AC Q6NQJ8; Q9FFI7;
DT 16-MAY-2006, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=Protein SET DOMAIN GROUP 40;
DE EC=2.1.1.-;
GN Name=SDG40; Synonyms=SET40; OrderedLocusNames=At5g17240; ORFNames=MKP11.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the class V-like SAM-binding methyltransferase
CC superfamily. {ECO:0000255|PROSITE-ProRule:PRU00190}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB10511.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AB005238; BAB10511.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED92403.1; -; Genomic_DNA.
DR EMBL; BT010455; AAQ62875.1; -; mRNA.
DR EMBL; AK175921; BAD43684.1; -; mRNA.
DR RefSeq; NP_197226.2; NM_121730.4.
DR AlphaFoldDB; Q6NQJ8; -.
DR SMR; Q6NQJ8; -.
DR BioGRID; 16864; 3.
DR IntAct; Q6NQJ8; 3.
DR STRING; 3702.AT5G17240.1; -.
DR PaxDb; Q6NQJ8; -.
DR PRIDE; Q6NQJ8; -.
DR ProteomicsDB; 232776; -.
DR EnsemblPlants; AT5G17240.1; AT5G17240.1; AT5G17240.
DR GeneID; 831588; -.
DR Gramene; AT5G17240.1; AT5G17240.1; AT5G17240.
DR KEGG; ath:AT5G17240; -.
DR Araport; AT5G17240; -.
DR TAIR; locus:2167235; AT5G17240.
DR eggNOG; KOG1337; Eukaryota.
DR HOGENOM; CLU_570338_0_0_1; -.
DR InParanoid; Q6NQJ8; -.
DR OMA; VDCISYC; -.
DR OrthoDB; 1209399at2759; -.
DR PhylomeDB; Q6NQJ8; -.
DR PRO; PR:Q6NQJ8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q6NQJ8; baseline and differential.
DR Genevisible; Q6NQJ8; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0016279; F:protein-lysine N-methyltransferase activity; IBA:GO_Central.
DR GO; GO:0018026; P:peptidyl-lysine monomethylation; IBA:GO_Central.
DR Gene3D; 3.90.1420.10; -; 1.
DR InterPro; IPR036464; Rubisco_LSMT_subst-bd_sf.
DR InterPro; IPR001214; SET_dom.
DR InterPro; IPR046341; SET_dom_sf.
DR Pfam; PF00856; SET; 1.
DR SUPFAM; SSF81822; SSF81822; 1.
DR SUPFAM; SSF82199; SSF82199; 1.
DR PROSITE; PS50280; SET; 1.
PE 2: Evidence at transcript level;
KW Methyltransferase; Reference proteome; S-adenosyl-L-methionine;
KW Transferase.
FT CHAIN 1..491
FT /note="Protein SET DOMAIN GROUP 40"
FT /id="PRO_0000234285"
FT DOMAIN 36..278
FT /note="SET"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00190"
SQ SEQUENCE 491 AA; 55873 MW; 54BFA2C476FD6E9F CRC64;
MDLEHQTMET FLRWAAEIGI SDSIDSSRFR DSCLGHSLSV SDFPDAGGRG LGAARELKKG
ELVLKVPRKA LMTTESIIAK DLKLSDAVNL HNSLSSTQIL SVCLLYEMSK EKKSFWYPYL
FHIPRDYDLL ATFGNFEKQA LQVEDAVWAT EKATAKCQSE WKEAGSLMKE LELKPKFRSF
QAWLWASATI SSRTLHVPWD SAGCLCPVGD LFNYDAPGDY SNTPQGPESA NNVEEAGLVV
ETHSERLTDG GFEEDVNAYC LYARRNYQLG EQVLLCYGTY TNLELLEHYG FMLEENSNDK
VFIPLETSLF SLASSWPKDS LYIHQDGKLS FALISTLRLW LIPQSQRDKS VMRLVYAGSQ
ISVKNEILVM KWMSEKCGSV LRDLPTSVTE DTVLLHNIDK LQDPELRLEQ KETEAFGSEV
RAFLDANCLW DVTVLSGKPI EFSRKTSRML SKWRWSVQWR LSYKRTLADC ISYCNEKMNN
LLGTQDRLRD L
