SDH5_ORYSJ
ID SDH5_ORYSJ Reviewed; 231 AA.
AC Q0JDA2; A0A0P0W9Z6; Q7X6C3;
DT 04-FEB-2015, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Succinate dehydrogenase subunit 5, mitochondrial {ECO:0000305};
DE Flags: Precursor;
GN Name=SDH5 {ECO:0000305};
GN OrderedLocusNames=Os04g0418000 {ECO:0000312|EMBL:BAF14685.1},
GN LOC_Os04g34100;
GN ORFNames=OsJ_14772 {ECO:0000312|EMBL:EAZ30714.1},
GN OSJNBa0033G16.15 {ECO:0000312|EMBL:CAE03169.1},
GN OSJNBb0108J11.2 {ECO:0000312|EMBL:CAE02910.3};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBUNIT.
RX PubMed=19924544; DOI=10.1007/s11103-009-9573-z;
RA Huang S., Taylor N.L., Narsai R., Eubel H., Whelan J., Millar A.H.;
RT "Functional and composition differences between mitochondrial complex II in
RT Arabidopsis and rice are correlated with the complex genetic history of the
RT enzyme.";
RL Plant Mol. Biol. 72:331-342(2010).
CC -!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle.
CC {ECO:0000305}.
CC -!- SUBUNIT: Component of complex II composed of eight subunits in plants:
CC four classical SDH subunits SDH1, SDH2, SDH3 and SDH4 (a flavoprotein
CC (FP), an iron-sulfur protein (IP), and a cytochrome b composed of a
CC large and a small subunit.), as well as four subunits unknown in
CC mitochondria from bacteria and heterotrophic eukaryotes.
CC {ECO:0000269|PubMed:19924544}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion inner membrane {ECO:0000305};
CC Peripheral membrane protein {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAE02910.3; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAE03169.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EAZ30714.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL606598; CAE03169.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL606618; CAE02910.3; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008210; BAF14685.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS89168.1; -; Genomic_DNA.
DR EMBL; CM000141; EAZ30714.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK099124; BAG93939.1; -; mRNA.
DR EMBL; AK106155; BAG97606.1; -; mRNA.
DR EMBL; AK119714; BAG99762.1; -; mRNA.
DR RefSeq; XP_015637221.1; XM_015781735.1.
DR AlphaFoldDB; Q0JDA2; -.
DR STRING; 4530.OS04T0418000-01; -.
DR PaxDb; Q0JDA2; -.
DR PRIDE; Q0JDA2; -.
DR EnsemblPlants; Os04t0418000-01; Os04t0418000-01; Os04g0418000.
DR GeneID; 4335816; -.
DR Gramene; Os04t0418000-01; Os04t0418000-01; Os04g0418000.
DR KEGG; osa:4335816; -.
DR eggNOG; ENOG502QQK1; Eukaryota.
DR HOGENOM; CLU_076459_0_0_1; -.
DR InParanoid; Q0JDA2; -.
DR OMA; PDENYLR; -.
DR OrthoDB; 1220352at2759; -.
DR UniPathway; UPA00223; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q0JDA2; OS.
DR GO; GO:0005743; C:mitochondrial inner membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0045273; C:respiratory chain complex II; IDA:UniProtKB.
DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-UniPathway.
DR InterPro; IPR025397; SDH5.
DR PANTHER; PTHR36139; PTHR36139; 1.
DR Pfam; PF14290; DUF4370; 1.
PE 1: Evidence at protein level;
KW Membrane; Mitochondrion; Mitochondrion inner membrane; Reference proteome;
KW Transit peptide; Tricarboxylic acid cycle.
FT TRANSIT 1..63
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 64..231
FT /note="Succinate dehydrogenase subunit 5, mitochondrial"
FT /evidence="ECO:0000255"
FT /id="PRO_0000431751"
SQ SEQUENCE 231 AA; 24583 MW; F44F13170BADFF53 CRC64;
MAAALRSSCA AARRLLRISP AALSTLTAAS SRPAAVAPLA RPIAAAAVSG GNNAFSWNLR
RLFSSNEKHL PAISDPEVES AFKDLMAASW TGLPDSLVIE AKKAASKATD DKAGKEALLN
VFRAAEACEE FGGVLVTLRM ALDDLCGITG ENVGPLPGYI EDAVKSAYKR YMKYLESFGP
EENYLRKKVE NELGTKMIHL KMRCSGVGSE WGKITLIGTS GISGSYVELR A
