SDHD_ACIAC
ID SDHD_ACIAC Reviewed; 451 AA.
AC A1TPW5;
DT 26-JUN-2007, integrated into UniProtKB/Swiss-Prot.
DT 26-JUN-2007, sequence version 2.
DT 25-MAY-2022, entry version 74.
DE RecName: Full=Probable D-serine dehydratase {ECO:0000255|HAMAP-Rule:MF_01030};
DE EC=4.3.1.18 {ECO:0000255|HAMAP-Rule:MF_01030};
DE AltName: Full=D-serine deaminase {ECO:0000255|HAMAP-Rule:MF_01030};
DE Short=DSD {ECO:0000255|HAMAP-Rule:MF_01030};
GN Name=dsdA {ECO:0000255|HAMAP-Rule:MF_01030}; OrderedLocusNames=Aave_2428;
OS Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp. citrulli).
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Acidovorax.
OX NCBI_TaxID=397945;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AAC00-1;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T.,
RA Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M.,
RA Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P.;
RT "Complete sequence of Acidovorax avenae subsp. citrulli AAC00-1.";
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=D-serine = NH4(+) + pyruvate; Xref=Rhea:RHEA:13977,
CC ChEBI:CHEBI:15361, ChEBI:CHEBI:28938, ChEBI:CHEBI:35247; EC=4.3.1.18;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01030};
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01030};
CC -!- SIMILARITY: Belongs to the serine/threonine dehydratase family. DsdA
CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01030}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABM33003.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; CP000512; ABM33003.1; ALT_INIT; Genomic_DNA.
DR AlphaFoldDB; A1TPW5; -.
DR SMR; A1TPW5; -.
DR STRING; 397945.Aave_2428; -.
DR EnsemblBacteria; ABM33003; ABM33003; Aave_2428.
DR KEGG; aav:Aave_2428; -.
DR eggNOG; COG3048; Bacteria.
DR HOGENOM; CLU_035707_0_0_4; -.
DR Proteomes; UP000002596; Chromosome.
DR GO; GO:0008721; F:D-serine ammonia-lyase activity; IEA:UniProtKB-EC.
DR GO; GO:0016836; F:hydro-lyase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
DR GO; GO:0046416; P:D-amino acid metabolic process; IEA:UniProtKB-UniRule.
DR Gene3D; 3.40.50.1100; -; 2.
DR HAMAP; MF_01030; D_Ser_dehydrat; 1.
DR InterPro; IPR011780; D_Ser_am_lyase.
DR InterPro; IPR001926; PLP-dep.
DR InterPro; IPR036052; Trypto_synt_PLP_dependent.
DR PANTHER; PTHR48078:SF9; PTHR48078:SF9; 1.
DR Pfam; PF00291; PALP; 1.
DR SUPFAM; SSF53686; SSF53686; 1.
DR TIGRFAMs; TIGR02035; D_Ser_am_lyase; 1.
PE 3: Inferred from homology;
KW Lyase; Pyridoxal phosphate; Reference proteome.
FT CHAIN 1..451
FT /note="Probable D-serine dehydratase"
FT /id="PRO_0000291716"
FT REGION 1..55
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 35..49
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 118
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01030"
SQ SEQUENCE 451 AA; 47903 MW; 36C0959FABC45AAD CRC64;
MPGRTRPSCR LAITFTPRPD SATPRAGRAA PATGRRSNRS RSTLSATASP MPRRPHRIRS
LGLLDRRDNY LDMLRTGGGI ESPLIEAGAL SDAMGLEPGC GRLWIKADHG LPVAGSIKAR
GGIHEVLEFA ETLAVREGLL SPGQDCRVLA EPAAREVFGR HQVAVGSTGN LGLSIGVAAS
ALGFRAAVHM SADAKEWKKE RLRRRGVEVV EHAGDYERAV AAGRSQAQAD PFSHFVDDER
SLSLLLGYSA AALHLRGQLA EQGIVVDAKH PLFVYLPCGV GGAPAGITFG LRQLLGPHVH
CFFAEPVQSP CFLVQMAAPA GTHPSVYDLG LTNRTEADGL AVPRASLLAA GLMQPLLSGI
FTVRDDTLFE HLVRVLDATG ERIEPSAAAG FSGPALLTGS DGGRLWLRAQ GLDVQLPQAT
HLVWTTGGLF VPEAEHQRFE ARGRSLLEAA A