SDHD_ACIET
ID SDHD_ACIET Reviewed; 451 AA.
AC B9MIR7;
DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT 24-MAR-2009, sequence version 1.
DT 03-AUG-2022, entry version 61.
DE RecName: Full=Probable D-serine dehydratase {ECO:0000255|HAMAP-Rule:MF_01030};
DE EC=4.3.1.18 {ECO:0000255|HAMAP-Rule:MF_01030};
DE AltName: Full=D-serine deaminase {ECO:0000255|HAMAP-Rule:MF_01030};
DE Short=DSD {ECO:0000255|HAMAP-Rule:MF_01030};
GN Name=dsdA {ECO:0000255|HAMAP-Rule:MF_01030}; OrderedLocusNames=Dtpsy_1624;
OS Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Diaphorobacter.
OX NCBI_TaxID=535289;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TPSY;
RG US DOE Joint Genome Institute;
RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D.,
RA Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Coates J.D.;
RT "Complete sequence of Diaphorobacter sp. TPSY.";
RL Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=D-serine = NH4(+) + pyruvate; Xref=Rhea:RHEA:13977,
CC ChEBI:CHEBI:15361, ChEBI:CHEBI:28938, ChEBI:CHEBI:35247; EC=4.3.1.18;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01030};
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01030};
CC -!- SIMILARITY: Belongs to the serine/threonine dehydratase family. DsdA
CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01030}.
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DR EMBL; CP001392; ACM33083.1; -; Genomic_DNA.
DR RefSeq; WP_015913178.1; NC_011992.1.
DR AlphaFoldDB; B9MIR7; -.
DR SMR; B9MIR7; -.
DR STRING; 535289.Dtpsy_1624; -.
DR EnsemblBacteria; ACM33083; ACM33083; Dtpsy_1624.
DR KEGG; dia:Dtpsy_1624; -.
DR eggNOG; COG3048; Bacteria.
DR HOGENOM; CLU_035707_0_0_4; -.
DR OMA; ESDPNCF; -.
DR OrthoDB; 912282at2; -.
DR Proteomes; UP000000450; Chromosome.
DR GO; GO:0008721; F:D-serine ammonia-lyase activity; IEA:UniProtKB-EC.
DR GO; GO:0016836; F:hydro-lyase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
DR GO; GO:0046416; P:D-amino acid metabolic process; IEA:UniProtKB-UniRule.
DR Gene3D; 3.40.50.1100; -; 2.
DR HAMAP; MF_01030; D_Ser_dehydrat; 1.
DR InterPro; IPR011780; D_Ser_am_lyase.
DR InterPro; IPR001926; PLP-dep.
DR InterPro; IPR036052; Trypto_synt_PLP_dependent.
DR PANTHER; PTHR48078:SF9; PTHR48078:SF9; 1.
DR Pfam; PF00291; PALP; 1.
DR SUPFAM; SSF53686; SSF53686; 1.
DR TIGRFAMs; TIGR02035; D_Ser_am_lyase; 1.
PE 3: Inferred from homology;
KW Lyase; Pyridoxal phosphate.
FT CHAIN 1..451
FT /note="Probable D-serine dehydratase"
FT /id="PRO_1000149386"
FT MOD_RES 119
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01030"
SQ SEQUENCE 451 AA; 47810 MW; 7C1388F68229FA72 CRC64;
MPSVVSPQDR LQDDAPAAQL RRAEPCLWLN PHRQPIPAAR QAVAGDHISL DDTKEAAARF
ARFAPLLEGV FPELQATGGV IESPLLPASS LHAAAGLVAG QGALWIKADH RLPVAGSIKA
RGGIHEVLEL AERLALQHGL LTPQSDADDY RALANPAARA VFARYTVAVG STGNLGLSIG
VAASALGFHA VVHMSADAKE WKKQRLRQRG VQVVEHAGDY EGAVAAGRAQ AAQDPFSHFV
DDERSLSLLL GYSAAALHLR QQLQDAGIAV DAQHPLFVYL PCGVGGAPAG ITFGLRQVLG
AHVHCFFAEP VQSPCFMVQM MAGQGAHPSV YDWGLTNRTE ADGLAVPRAS LPAAELMEPL
LSGCFTVCDD TLFRQLVQVL DATGERIEPS AAAGLSGPGF LTGTETGRTW LHAQGLWPHL
AQATHLVWTT GGLYVPPEAY ARFEERGRAL G