SDHD_GEOSE
ID SDHD_GEOSE Reviewed; 459 AA.
AC Q75TH5;
DT 01-FEB-2005, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 52.
DE RecName: Full=Probable D-serine dehydratase {ECO:0000255|HAMAP-Rule:MF_01030};
DE EC=4.3.1.18 {ECO:0000255|HAMAP-Rule:MF_01030};
DE AltName: Full=D-serine deaminase {ECO:0000255|HAMAP-Rule:MF_01030};
DE Short=DSD {ECO:0000255|HAMAP-Rule:MF_01030};
GN Name=dsdA {ECO:0000255|HAMAP-Rule:MF_01030}; Synonyms=GSB10;
OS Geobacillus stearothermophilus (Bacillus stearothermophilus).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.
OX NCBI_TaxID=1422;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=HTA462;
RX PubMed=15168170; DOI=10.1007/s00792-004-0394-3;
RA Takami H., Nishi S., Lu J., Shimamura S., Takaki Y.;
RT "Genomic characterization of thermophilic Geobacillus species isolated from
RT the deepest sea mud of the Mariana Trench.";
RL Extremophiles 8:351-356(2004).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=D-serine = NH4(+) + pyruvate; Xref=Rhea:RHEA:13977,
CC ChEBI:CHEBI:15361, ChEBI:CHEBI:28938, ChEBI:CHEBI:35247; EC=4.3.1.18;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01030};
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01030};
CC -!- SIMILARITY: Belongs to the serine/threonine dehydratase family. DsdA
CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01030}.
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DR EMBL; AB126616; BAD18303.1; -; Genomic_DNA.
DR AlphaFoldDB; Q75TH5; -.
DR SMR; Q75TH5; -.
DR PRIDE; Q75TH5; -.
DR GO; GO:0008721; F:D-serine ammonia-lyase activity; IEA:UniProtKB-EC.
DR GO; GO:0016836; F:hydro-lyase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
DR GO; GO:0046416; P:D-amino acid metabolic process; IEA:UniProtKB-UniRule.
DR Gene3D; 3.40.50.1100; -; 2.
DR HAMAP; MF_01030; D_Ser_dehydrat; 1.
DR InterPro; IPR011780; D_Ser_am_lyase.
DR InterPro; IPR001926; PLP-dep.
DR InterPro; IPR000634; Ser/Thr_deHydtase_PyrdxlP-BS.
DR InterPro; IPR036052; Trypto_synt_PLP_dependent.
DR PANTHER; PTHR48078:SF9; PTHR48078:SF9; 1.
DR Pfam; PF00291; PALP; 1.
DR SUPFAM; SSF53686; SSF53686; 1.
DR TIGRFAMs; TIGR02035; D_Ser_am_lyase; 1.
DR PROSITE; PS00165; DEHYDRATASE_SER_THR; 1.
PE 3: Inferred from homology;
KW Lyase; Pyridoxal phosphate.
FT CHAIN 1..459
FT /note="Probable D-serine dehydratase"
FT /id="PRO_0000185607"
FT MOD_RES 119
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01030"
SQ SEQUENCE 459 AA; 51196 MW; 0A71BB1D9CA429D8 CRC64;
MMTKNEIQKW VKEFPLLKTI MAAEEVFWRN PKYHAFAQAI RTIPLRERDV KEAEERLRRF
APYIAKAFPE TRTAHGIIES PLVRISNMKQ RLEKMFQTNI EGELLLKCDS HLPISGSIKA
RGGIYEVLKH AEDLALANGM ITIGDDYAVM DSEKFRQFFS RYSLVVGSTG NLGLSIGIIG
AKLGFRVTVH MSADAKQWKK DLLRSKGVTV IEHLTDYNKV VEEARRQSAE DPTSYFIDDE
NSIHLFLGYA VAAFRLKKQL EDMNITVDEN HPLFVYLPCG VGGGPGGVTF GLKLVYGDHV
HCFFAEPTHS PCMLLGLMTG EHDRVSVQDF GLDNKTEADG LAVGRPSRLV GNMLENVISG
VYTVDDSTLY RLLAAMVETE EIYLEPSALA GVAGPVRLFR DLAGQTYVEA NGLKEKMKNA
THIGWATGGS MVPKDVMEAY YREGVRIETM TGNGFSEGR