SDI1_ARATH
ID SDI1_ARATH Reviewed; 306 AA.
AC Q8GXU5; Q9FKB2;
DT 29-OCT-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 126.
DE RecName: Full=Protein SULFUR DEFICIENCY-INDUCED 1 {ECO:0000303|PubMed:19154231};
DE Short=AtSDI1 {ECO:0000303|PubMed:19154231};
GN Name=SDI1 {ECO:0000303|PubMed:19154231};
GN OrderedLocusNames=At5g48850 {ECO:0000312|Araport:AT5G48850};
GN ORFNames=K24G6.19 {ECO:0000312|EMBL:BAB09438.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|EMBL:BAC42669.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP INDUCTION BY SULFUR DEPRIVATION.
RX PubMed=15842617; DOI=10.1111/j.1365-313x.2005.02363.x;
RA Maruyama-Nakashita A., Nakamura Y., Watanabe-Takahashi A., Inoue E.,
RA Yamaya T., Takahashi H.;
RT "Identification of a novel cis-acting element conferring sulfur deficiency
RT response in Arabidopsis roots.";
RL Plant J. 42:305-314(2005).
RN [6]
RP FUNCTION, DISRUPTION PHENOTYPE, AND INDUCTION BY SULFUR DEPRIVATION.
RX PubMed=19154231; DOI=10.1111/j.1467-7652.2008.00391.x;
RA Howarth J.R., Parmar S., Barraclough P.B., Hawkesford M.J.;
RT "A sulphur deficiency-induced gene, sdi1, involved in the utilization of
RT stored sulphate pools under sulphur-limiting conditions has potential as a
RT diagnostic indicator of sulphur nutritional status.";
RL Plant Biotechnol. J. 7:200-209(2009).
CC -!- FUNCTION: Involved in the utilization of stored sulfate under sulfur-
CC deficient conditions. {ECO:0000269|PubMed:19154231}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q9SUC3}.
CC -!- INDUCTION: Induced in response to sulfur deprivation.
CC {ECO:0000269|PubMed:15842617, ECO:0000269|PubMed:19154231}.
CC -!- DISRUPTION PHENOTYPE: Maintain higher tissue sulfate concentrations
CC under sulfur-limiting conditions. {ECO:0000269|PubMed:19154231}.
CC -!- SIMILARITY: Belongs to the MS5 protein family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB09438.1; Type=Erroneous gene model prediction;
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DR EMBL; AB012242; BAB09438.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED95733.1; -; Genomic_DNA.
DR EMBL; AK118038; BAC42669.1; -; mRNA.
DR EMBL; BT005297; AAO63361.1; -; mRNA.
DR RefSeq; NP_199696.2; NM_124262.4.
DR AlphaFoldDB; Q8GXU5; -.
DR SMR; Q8GXU5; -.
DR STRING; 3702.AT5G48850.1; -.
DR PaxDb; Q8GXU5; -.
DR PRIDE; Q8GXU5; -.
DR EnsemblPlants; AT5G48850.1; AT5G48850.1; AT5G48850.
DR GeneID; 834943; -.
DR Gramene; AT5G48850.1; AT5G48850.1; AT5G48850.
DR KEGG; ath:AT5G48850; -.
DR Araport; AT5G48850; -.
DR TAIR; locus:2156574; AT5G48850.
DR eggNOG; ENOG502QSSW; Eukaryota.
DR HOGENOM; CLU_057017_0_0_1; -.
DR InParanoid; Q8GXU5; -.
DR OMA; MRQSRYE; -.
DR OrthoDB; 924027at2759; -.
DR PRO; PR:Q8GXU5; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8GXU5; baseline and differential.
DR Genevisible; Q8GXU5; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0017053; C:transcription repressor complex; IDA:TAIR.
DR GO; GO:0010438; P:cellular response to sulfur starvation; IEP:UniProtKB.
DR GO; GO:0010439; P:regulation of glucosinolate biosynthetic process; IGI:TAIR.
DR GO; GO:0006792; P:regulation of sulfur utilization; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 1.
DR InterPro; IPR044961; MS5/SDI1.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR36326; PTHR36326; 1.
DR Pfam; PF13181; TPR_8; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR PROSITE; PS50005; TPR; 1.
DR PROSITE; PS50293; TPR_REGION; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Nucleus; Reference proteome; Repeat; TPR repeat.
FT CHAIN 1..306
FT /note="Protein SULFUR DEFICIENCY-INDUCED 1"
FT /id="PRO_0000430656"
FT REPEAT 1..22
FT /note="TPR 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT REPEAT 71..104
FT /note="TPR 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT REPEAT 107..140
FT /note="TPR 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT REPEAT 167..200
FT /note="TPR 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT REPEAT 202..233
FT /note="TPR 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT REPEAT 270..304
FT /note="TPR 6"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00339"
FT COILED 72..139
FT /evidence="ECO:0000255"
FT COILED 238..260
FT /evidence="ECO:0000255"
SQ SEQUENCE 306 AA; 35257 MW; 49EE53E8BEE715C6 CRC64;
MERSLKKTKN NYNNSIKSNL MKDDELFHVI HKVPCGDTPY VRAKHAQLIE KNPEMAIVWF
WKAINTGDRV DSALKDMAVV MKQLDRSEEA IEAIKSFRPR CSKNSQDSLD NVLIDLYKKC
GRMEEQVELL KRKLRQIYQG EAFNGKPTKT ARSHGKKFQV TVQQEISRLL GNLGWAYMQQ
AKYLSAEAVY RKAQMVEPDA NKSCNLAMCL IKQGRFEEGR LVLDDVLEYR VLGADDCRTR
QRAEELLSEL ESSLPRMRDA EMEDVLGNIL DDDFVLGLEE MTSTSFKSKR LPIFEQISSF
RNTLVC
