SDO1_ARCFU
ID SDO1_ARCFU Reviewed; 234 AA.
AC O29759;
DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 25-MAY-2022, entry version 121.
DE RecName: Full=Ribosome maturation protein SDO1 homolog;
GN OrderedLocusNames=AF_0491;
OS Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC
OS 100126 / VC-16).
OC Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae;
OC Archaeoglobus.
OX NCBI_TaxID=224325;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16;
RX PubMed=9389475; DOI=10.1038/37052;
RA Klenk H.-P., Clayton R.A., Tomb J.-F., White O., Nelson K.E., Ketchum K.A.,
RA Dodson R.J., Gwinn M.L., Hickey E.K., Peterson J.D., Richardson D.L.,
RA Kerlavage A.R., Graham D.E., Kyrpides N.C., Fleischmann R.D.,
RA Quackenbush J., Lee N.H., Sutton G.G., Gill S.R., Kirkness E.F.,
RA Dougherty B.A., McKenney K., Adams M.D., Loftus B.J., Peterson S.N.,
RA Reich C.I., McNeil L.K., Badger J.H., Glodek A., Zhou L., Overbeek R.,
RA Gocayne J.D., Weidman J.F., McDonald L.A., Utterback T.R., Cotton M.D.,
RA Spriggs T., Artiach P., Kaine B.P., Sykes S.M., Sadow P.W., D'Andrea K.P.,
RA Bowman C., Fujii C., Garland S.A., Mason T.M., Olsen G.J., Fraser C.M.,
RA Smith H.O., Woese C.R., Venter J.C.;
RT "The complete genome sequence of the hyperthermophilic, sulphate-reducing
RT archaeon Archaeoglobus fulgidus.";
RL Nature 390:364-370(1997).
RN [2]
RP X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS).
RX PubMed=15701634; DOI=10.1074/jbc.m414421200;
RA Savchenko A., Krogan N., Cort J.R., Evdokimova E., Lew J.M., Yee A.A.,
RA Sanchez-Pulido L., Andrade M.A., Bochkarev A., Watson J.D., Kennedy M.A.,
RA Greenblatt J., Hughes T., Arrowsmith C.H., Rommens J.M., Edwards A.M.;
RT "The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA
RT metabolism.";
RL J. Biol. Chem. 280:19213-19220(2005).
RN [3]
RP X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS) OF 2-234.
RX PubMed=15701631; DOI=10.1074/jbc.m414656200;
RA Shammas C., Menne T.F., Hilcenko C., Michell S.R., Goyenechea B.,
RA Boocock G.R.B., Durie P.R., Rommens J.M., Warren A.J.;
RT "Structural and mutational analysis of the SBDS protein family. Insight
RT into the leukemia-associated Shwachman-Diamond Syndrome.";
RL J. Biol. Chem. 280:19221-19229(2005).
CC -!- SIMILARITY: Belongs to the SDO1/SBDS family. {ECO:0000305}.
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DR EMBL; AE000782; AAB90746.1; -; Genomic_DNA.
DR PIR; C69311; C69311.
DR RefSeq; WP_010877998.1; NC_000917.1.
DR PDB; 1P9Q; X-ray; 2.00 A; C=1-234.
DR PDB; 1T95; X-ray; 1.90 A; A=2-234.
DR PDB; 6FSW; X-ray; 1.90 A; A=1-234.
DR PDBsum; 1P9Q; -.
DR PDBsum; 1T95; -.
DR PDBsum; 6FSW; -.
DR AlphaFoldDB; O29759; -.
DR SMR; O29759; -.
DR STRING; 224325.AF_0491; -.
DR EnsemblBacteria; AAB90746; AAB90746; AF_0491.
DR GeneID; 1483708; -.
DR KEGG; afu:AF_0491; -.
DR eggNOG; arCOG04187; Archaea.
DR HOGENOM; CLU_043216_2_0_2; -.
DR OMA; AVNPQMD; -.
DR OrthoDB; 59861at2157; -.
DR PhylomeDB; O29759; -.
DR EvolutionaryTrace; O29759; -.
DR Proteomes; UP000002199; Chromosome.
DR GO; GO:0042256; P:mature ribosome assembly; IEA:InterPro.
DR Gene3D; 1.10.10.900; -; 1.
DR Gene3D; 3.30.1250.10; -; 1.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR018023; Ribosome_mat_SBDS_CS.
DR InterPro; IPR036786; Ribosome_mat_SBDS_N_sf.
DR InterPro; IPR018978; Ribosome_mat_Sdo1/SBDS_C.
DR InterPro; IPR019783; Ribosome_mat_Sdo1/SBDS_N.
DR InterPro; IPR002140; Sdo1/SBDS.
DR InterPro; IPR039100; Sdo1/SBDS-like.
DR InterPro; IPR037188; Sdo1/SBDS_central_sf.
DR PANTHER; PTHR10927; PTHR10927; 1.
DR Pfam; PF01172; SBDS; 1.
DR Pfam; PF09377; SBDS_C; 1.
DR SUPFAM; SSF109728; SSF109728; 1.
DR SUPFAM; SSF54980; SSF54980; 1.
DR SUPFAM; SSF89895; SSF89895; 1.
DR TIGRFAMs; TIGR00291; RNA_SBDS; 1.
DR PROSITE; PS01267; UPF0023; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome.
FT CHAIN 1..234
FT /note="Ribosome maturation protein SDO1 homolog"
FT /id="PRO_0000123768"
FT TURN 4..6
FT /evidence="ECO:0007829|PDB:6FSW"
FT STRAND 8..14
FT /evidence="ECO:0007829|PDB:1T95"
FT STRAND 17..23
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 25..32
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 39..42
FT /evidence="ECO:0007829|PDB:1T95"
FT STRAND 43..46
FT /evidence="ECO:0007829|PDB:1T95"
FT STRAND 49..51
FT /evidence="ECO:0007829|PDB:1T95"
FT TURN 52..55
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 60..67
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 72..82
FT /evidence="ECO:0007829|PDB:1T95"
FT STRAND 83..85
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 89..110
FT /evidence="ECO:0007829|PDB:1T95"
FT STRAND 111..113
FT /evidence="ECO:0007829|PDB:1T95"
FT TURN 114..117
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 122..131
FT /evidence="ECO:0007829|PDB:1T95"
FT TURN 143..145
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 146..153
FT /evidence="ECO:0007829|PDB:1T95"
FT TURN 154..156
FT /evidence="ECO:0007829|PDB:1T95"
FT STRAND 163..170
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 172..174
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 175..185
FT /evidence="ECO:0007829|PDB:1T95"
FT STRAND 188..193
FT /evidence="ECO:0007829|PDB:1T95"
FT STRAND 199..206
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 207..209
FT /evidence="ECO:0007829|PDB:1T95"
FT HELIX 210..221
FT /evidence="ECO:0007829|PDB:1T95"
FT STRAND 226..233
FT /evidence="ECO:0007829|PDB:1T95"
SQ SEQUENCE 234 AA; 26565 MW; 9A6C3418756E54F1 CRC64;
MVSLDKAVIA RLRKGGEEFE VLVDPYLARD LKEGKEVNFE DLLAAEEVFK DAKKGERASV
DELRKIFGTD DVFEIARKII LEGEVQITAE QRREMLEAKR KQIINFISRN TIDPRTNAPH
PPSRIERALE EAKVHIDIFK SVEAQVKDIV KALKPILPLK FEEMEIAIKI PPEHTGRAIS
ALYNFGGVTR EEWQRDGSWI CVMRIPSGMY GDLMDLLGKV AKGEALTKVL RRIG
