SDO1_METTH
ID SDO1_METTH Reviewed; 232 AA.
AC O26781;
DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=Ribosome maturation protein SDO1 homolog;
GN OrderedLocusNames=MTH_685;
OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
OS 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum).
OC Archaea; Euryarchaeota; Methanomada group; Methanobacteria;
OC Methanobacteriales; Methanobacteriaceae; Methanothermobacter.
OX NCBI_TaxID=187420;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H;
RX PubMed=9371463; DOI=10.1128/jb.179.22.7135-7155.1997;
RA Smith D.R., Doucette-Stamm L.A., Deloughery C., Lee H.-M., Dubois J.,
RA Aldredge T., Bashirzadeh R., Blakely D., Cook R., Gilbert K., Harrison D.,
RA Hoang L., Keagle P., Lumm W., Pothier B., Qiu D., Spadafora R., Vicare R.,
RA Wang Y., Wierzbowski J., Gibson R., Jiwani N., Caruso A., Bush D.,
RA Safer H., Patwell D., Prabhakar S., McDougall S., Shimer G., Goyal A.,
RA Pietrovski S., Church G.M., Daniels C.J., Mao J.-I., Rice P., Noelling J.,
RA Reeve J.N.;
RT "Complete genome sequence of Methanobacterium thermoautotrophicum deltaH:
RT functional analysis and comparative genomics.";
RL J. Bacteriol. 179:7135-7155(1997).
RN [2]
RP X-RAY CRYSTALLOGRAPHY (1.75 ANGSTROMS).
RX PubMed=19454024; DOI=10.1186/1472-6807-9-32;
RA Ng C.L., Waterman D.G., Koonin E.V., Walters A.D., Chong J.P., Isupov M.N.,
RA Lebedev A.A., Bunka D.H., Stockley P.G., Ortiz-Lombardia M., Antson A.A.;
RT "Conformational flexibility and molecular interactions of an archaeal
RT homologue of the Shwachman-Bodian-Diamond syndrome protein.";
RL BMC Struct. Biol. 9:32-32(2009).
CC -!- SIMILARITY: Belongs to the SDO1/SBDS family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AE000666; AAB85190.1; -; Genomic_DNA.
DR PIR; C69191; C69191.
DR RefSeq; WP_010876324.1; NC_000916.1.
DR PDB; 2WBM; X-ray; 1.75 A; A/B=1-232.
DR PDBsum; 2WBM; -.
DR AlphaFoldDB; O26781; -.
DR SMR; O26781; -.
DR STRING; 187420.MTH_685; -.
DR EnsemblBacteria; AAB85190; AAB85190; MTH_685.
DR GeneID; 24853827; -.
DR KEGG; mth:MTH_685; -.
DR PATRIC; fig|187420.15.peg.666; -.
DR HOGENOM; CLU_043216_2_0_2; -.
DR OMA; AVNPQMD; -.
DR EvolutionaryTrace; O26781; -.
DR Proteomes; UP000005223; Chromosome.
DR GO; GO:0042256; P:mature ribosome assembly; IEA:InterPro.
DR Gene3D; 1.10.10.900; -; 1.
DR Gene3D; 3.30.1250.10; -; 1.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR018023; Ribosome_mat_SBDS_CS.
DR InterPro; IPR036786; Ribosome_mat_SBDS_N_sf.
DR InterPro; IPR018978; Ribosome_mat_Sdo1/SBDS_C.
DR InterPro; IPR019783; Ribosome_mat_Sdo1/SBDS_N.
DR InterPro; IPR002140; Sdo1/SBDS.
DR InterPro; IPR039100; Sdo1/SBDS-like.
DR InterPro; IPR037188; Sdo1/SBDS_central_sf.
DR PANTHER; PTHR10927; PTHR10927; 1.
DR Pfam; PF01172; SBDS; 1.
DR Pfam; PF09377; SBDS_C; 1.
DR SUPFAM; SSF109728; SSF109728; 1.
DR SUPFAM; SSF54980; SSF54980; 1.
DR SUPFAM; SSF89895; SSF89895; 1.
DR TIGRFAMs; TIGR00291; RNA_SBDS; 1.
DR PROSITE; PS01267; UPF0023; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome.
FT CHAIN 1..232
FT /note="Ribosome maturation protein SDO1 homolog"
FT /id="PRO_0000123770"
FT TURN 4..6
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 8..14
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 17..23
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 25..32
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 40..43
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 44..47
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 50..52
FT /evidence="ECO:0007829|PDB:2WBM"
FT TURN 53..56
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 61..68
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 73..83
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 84..87
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 90..111
FT /evidence="ECO:0007829|PDB:2WBM"
FT TURN 115..117
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 123..132
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 139..141
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 143..154
FT /evidence="ECO:0007829|PDB:2WBM"
FT TURN 155..157
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 164..171
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 173..175
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 176..186
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 188..194
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 200..207
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 208..210
FT /evidence="ECO:0007829|PDB:2WBM"
FT HELIX 211..221
FT /evidence="ECO:0007829|PDB:2WBM"
FT TURN 222..224
FT /evidence="ECO:0007829|PDB:2WBM"
FT STRAND 227..230
FT /evidence="ECO:0007829|PDB:2WBM"
SQ SEQUENCE 232 AA; 26193 MW; 80ACC4306A5BF1AF CRC64;
MVSLEDAVIA RLESHGERFE VLVDPDLAAE FRREDSDVSV EDVLAVQEVF RDARKGDKAS
EEAMRKVFET ADPLEVTPVI LRRGTIQLTA EQRRQMIEDK RLKIINKIAR EAINPQNGLP
HPPKRIEKAM EEARVHVDPF KTVDEQVNIV LKAIRTKIPI KFEKVRVAIK IPGERAGSAY
GVISNFGKIT NEEWQNDGSW IAVVEIPGGL QDSFYQKLSE LTGGNVETRL IK
