SEC5B_ARATH
ID SEC5B_ARATH Reviewed; 1090 AA.
AC F4HWE6; Q9LMN3; Q9LPV1;
DT 11-DEC-2013, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 25-MAY-2022, entry version 69.
DE RecName: Full=Exocyst complex component SEC5B;
DE Short=AtSec5b;
GN Name=SEC5B; OrderedLocusNames=At1g21170; ORFNames=F16F4.13, T22I11.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC TISSUE=Root;
RX PubMed=18433157; DOI=10.1021/pr8000173;
RA de la Fuente van Bentem S., Anrather D., Dohnal I., Roitinger E.,
RA Csaszar E., Joore J., Buijnink J., Carreri A., Forzani C., Lorkovic Z.J.,
RA Barta A., Lecourieux D., Verhounig A., Jonak C., Hirt H.;
RT "Site-specific phosphorylation profiling of Arabidopsis proteins by mass
RT spectrometry and peptide chip analysis.";
RL J. Proteome Res. 7:2458-2470(2008).
RN [4]
RP COMPONENT OF THE EXOCYST COMPLEX, AND DISRUPTION PHENOTYPE.
RX PubMed=18492870; DOI=10.1105/tpc.108.059105;
RA Hala M., Cole R., Synek L., Drdova E., Pecenkova T., Nordheim A.,
RA Lamkemeyer T., Madlung J., Hochholdinger F., Fowler J.E., Zarsky V.;
RT "An exocyst complex functions in plant cell growth in Arabidopsis and
RT tobacco.";
RL Plant Cell 20:1330-1345(2008).
RN [5]
RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-179, AND IDENTIFICATION BY
RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC STRAIN=cv. Columbia;
RX PubMed=19245862; DOI=10.1016/j.jprot.2009.02.004;
RA Jones A.M.E., MacLean D., Studholme D.J., Serna-Sanz A., Andreasson E.,
RA Rathjen J.P., Peck S.C.;
RT "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis
RT thaliana.";
RL J. Proteomics 72:439-451(2009).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19895414; DOI=10.1111/j.1469-8137.2009.03070.x;
RA Chong Y.T., Gidda S.K., Sanford C., Parkinson J., Mullen R.T., Goring D.R.;
RT "Characterization of the Arabidopsis thaliana exocyst complex gene families
RT by phylogenetic, expression profiling, and subcellular localization
RT studies.";
RL New Phytol. 185:401-419(2010).
CC -!- FUNCTION: Component of the exocyst complex involved in the docking of
CC exocytic vesicles with fusion sites on the plasma membrane during
CC regulated or polarized secretion. Involved in polarized cell growth and
CC organ morphogenesis. During cytokinesis, involved in cell plate
CC initiation, cell plate maturation and formation of new primary cell
CC wall.
CC -!- SUBUNIT: The exocyst complex is composed of SEC3, SEC5, SEC6, SEC8,
CC SEC10, EXO70A1 and EXO84B.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions, but the double mutant sec5a-1 and sec5b-1 is male
CC gametophytic lethal due to defect in pollen germination and pollen tube
CC growth. {ECO:0000269|PubMed:18492870}.
CC -!- SIMILARITY: Belongs to the SEC5 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF80645.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAF81364.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC012190; AAF80645.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC036104; AAF81364.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE30072.1; -; Genomic_DNA.
DR PIR; A86345; A86345.
DR PIR; H86344; H86344.
DR RefSeq; NP_173541.1; NM_101971.3.
DR AlphaFoldDB; F4HWE6; -.
DR SMR; F4HWE6; -.
DR BioGRID; 23952; 1.
DR STRING; 3702.AT1G21170.1; -.
DR iPTMnet; F4HWE6; -.
DR PaxDb; F4HWE6; -.
DR PRIDE; F4HWE6; -.
DR ProteomicsDB; 232861; -.
DR EnsemblPlants; AT1G21170.1; AT1G21170.1; AT1G21170.
DR GeneID; 838713; -.
DR Gramene; AT1G21170.1; AT1G21170.1; AT1G21170.
DR KEGG; ath:AT1G21170; -.
DR Araport; AT1G21170; -.
DR TAIR; locus:2199552; AT1G21170.
DR eggNOG; KOG2347; Eukaryota.
DR HOGENOM; CLU_003742_0_0_1; -.
DR InParanoid; F4HWE6; -.
DR OMA; ERTRINM; -.
DR PRO; PR:F4HWE6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; F4HWE6; baseline and differential.
DR Genevisible; F4HWE6; AT.
DR GO; GO:0000145; C:exocyst; IBA:GO_Central.
DR GO; GO:0060321; P:acceptance of pollen; IGI:TAIR.
DR GO; GO:0006887; P:exocytosis; IBA:GO_Central.
DR GO; GO:0006893; P:Golgi to plasma membrane transport; IBA:GO_Central.
DR InterPro; IPR016159; Cullin_repeat-like_dom_sf.
DR InterPro; IPR029175; EXOC2/Sec5.
DR InterPro; IPR039481; EXOC2/Sec5_N_dom.
DR PANTHER; PTHR13043; PTHR13043; 1.
DR Pfam; PF15469; Sec5; 1.
DR SUPFAM; SSF74788; SSF74788; 1.
PE 1: Evidence at protein level;
KW Exocytosis; Phosphoprotein; Reference proteome; Transport.
FT CHAIN 1..1090
FT /note="Exocyst complex component SEC5B"
FT /id="PRO_0000424570"
FT REGION 1..126
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 485..511
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 984..1013
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1055..1090
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 19..47
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 107..126
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 485..505
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 996..1010
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1061..1079
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 179
FT /note="Phosphoserine"
FT /evidence="ECO:0007744|PubMed:19245862"
SQ SEQUENCE 1090 AA; 122673 MW; 9BFA42ECDF180537 CRC64;
MSSSDDLDED ELLQMALKEQ SQRDVTYQKP PSANSRKPVT NLVQQPRRQK RAAAPPSKGG
AKASRKPSMD EDDESEVELL SISSGDEDEG NDRGRGGGGD GGGGRGRGGS GKERGRARKE
DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF
PRGMECIDPL KLGIIDNKTL RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI
HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS
KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF KGTLYRSMED PKIDFTSLEN
TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ
IQQNGVQLSD DTSSMEDNQV QVDQPLEESA RREKDALRGR YIKILTAVIV YHLPTFWKTA
LSVFTGKFAK SSQVNDTSAS KAEEKAEEAR YSSHSLEEIA GMIRNTISVY EAKVQSTFHD
FDESYILHPY MSDTIKEVSK ACQAFEAKES APHSAVMALR KVKVEITKIY IQRLCSWMRA
STEEISKEET WIPVSILERN RSPYSISYLP LAFRSIIVSG MEQINMMILS LKGEAARSED
MFAHIEEILI SVRLAFLNCF LDFAAHLEQI GADLSQRTTK RESWQNGYSN DHQEEQSINA
PESVVDPHRQ LLMILSNIGY CKDELASELY NKYKYTWLQS RRNDEDISDL QDLMMSFSGL
GEKVLEHYTF AKANLIRTAA TNYLLDSGIQ WGAAPPVKGI RDAAVELLHT LVAVHAEVFA
GAKPLLDKIL GTLVEGLIDT FLSLLDENRS DDLSSIDANG FCQLMLELEY FETILKPYLT
VDATESLKSL QGAVLEKAIE SISETVENNP GGHQRKPTRG SEDAISDDKQ SSVSPDDLLA
LAQQCTSGML QLELEKTRLN SACFIETIPL DPVPPVAKAA YSRTSTDSPS RNYRESQPMG
SPVQARPRRR