SECAB_ARATH
ID SECAB_ARATH Reviewed; 829 AA.
AC X5JB51; Q56W60; Q8RVQ5; Q94CK5;
DT 18-JAN-2017, integrated into UniProtKB/Swiss-Prot.
DT 11-JUN-2014, sequence version 1.
DT 03-AUG-2022, entry version 42.
DE RecName: Full=Exocyst complex component SEC10b {ECO:0000303|PubMed:24728280};
DE Short=AtSec10b {ECO:0000303|PubMed:24728280};
GN Name=SEC10b {ECO:0000303|PubMed:24728280};
GN OrderedLocusNames=At5g12365 {ECO:0000303|PubMed:24728280};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RA Elias M., Cvrckova F., Zarsky V.;
RT "Molecular characterization of the exocyst complex in Arabidopsis
RT thaliana.";
RL Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], TISSUE SPECIFICITY, AND DISRUPTION
RP PHENOTYPE.
RX PubMed=24728280; DOI=10.1371/journal.pone.0094077;
RA Vukasinovic N., Cvrckova F., Elias M., Cole R., Fowler J.E., Zarsky V.,
RA Synek L.;
RT "Dissecting a hidden gene duplication: the Arabidopsis thaliana SEC10
RT locus.";
RL PLoS ONE 9:E94077-E94077(2014).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP COMPONENT OF THE EXOCYST COMPLEX.
RX PubMed=18492870; DOI=10.1105/tpc.108.059105;
RA Hala M., Cole R., Synek L., Drdova E., Pecenkova T., Nordheim A.,
RA Lamkemeyer T., Madlung J., Hochholdinger F., Fowler J.E., Zarsky V.;
RT "An exocyst complex functions in plant cell growth in Arabidopsis and
RT tobacco.";
RL Plant Cell 20:1330-1345(2008).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19895414; DOI=10.1111/j.1469-8137.2009.03070.x;
RA Chong Y.T., Gidda S.K., Sanford C., Parkinson J., Mullen R.T., Goring D.R.;
RT "Characterization of the Arabidopsis thaliana exocyst complex gene families
RT by phylogenetic, expression profiling, and subcellular localization
RT studies.";
RL New Phytol. 185:401-419(2010).
RN [7]
RP FUNCTION, AND INTERACTION WITH EXO84B.
RX PubMed=20870962; DOI=10.1105/tpc.110.074351;
RA Fendrych M., Synek L., Pecenkova T., Toupalova H., Cole R., Drdova E.,
RA Nebesarova J., Sedinova M., Hala M., Fowler J.E., Zarsky V.;
RT "The Arabidopsis exocyst complex is involved in cytokinesis and cell plate
RT maturation.";
RL Plant Cell 22:3053-3065(2010).
RN [8]
RP FUNCTION.
RX PubMed=23163883; DOI=10.1111/tpj.12074;
RA Drdova E.J., Synek L., Pecenkova T., Hala M., Kulich I., Fowler J.E.,
RA Murphy A.S., Zarsky V.;
RT "The exocyst complex contributes to PIN auxin efflux carrier recycling and
RT polar auxin transport in Arabidopsis.";
RL Plant J. 73:709-719(2013).
RN [9]
RP INTERACTION WITH EXO70E2, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. Columbia;
RX PubMed=24307681; DOI=10.1091/mbc.e13-10-0586;
RA Ding Y., Wang J., Chun Lai J.H., Ling Chan V.H., Wang X., Cai Y., Tan X.,
RA Bao Y., Xia J., Robinson D.G., Jiang L.;
RT "Exo70E2 is essential for exocyst subunit recruitment and EXPO formation in
RT both plants and animals.";
RL Mol. Biol. Cell 25:412-426(2014).
CC -!- FUNCTION: Component of the exocyst complex involved in the docking of
CC exocytic vesicles with fusion sites on the plasma membrane during
CC regulated or polarized secretion. Involved in polarized cell growth and
CC organ morphogenesis. During cytokinesis, involved in cell plate
CC initiation, cell plate maturation and formation of new primary cell
CC wall. {ECO:0000269|PubMed:20870962, ECO:0000269|PubMed:23163883}.
CC -!- SUBUNIT: The exocyst complex is composed of SEC3, SEC5, SEC6, SEC8,
CC SEC10, EXO70A1 and EXO84B. Interacts with EXO84B. Binds to EXO70E2
CC (PubMed:24307681). {ECO:0000269|PubMed:20870962,
CC ECO:0000269|PubMed:24307681}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytosol {ECO:0000269|PubMed:24307681}.
CC Secreted, extracellular exosome {ECO:0000269|PubMed:24307681}.
CC Note=Shuttles from the cytoplasm to the exocyst-positive organelle
CC (EXPO) in the presence of EXO70E2. {ECO:0000269|PubMed:24307681}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers.
CC {ECO:0000269|PubMed:24728280}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with
CC SEC10a. {ECO:0000269|PubMed:24728280}.
CC -!- SIMILARITY: Belongs to the SEC10 family. {ECO:0000305}.
CC -!- CAUTION: This locus, comprising the single gene At5g12370 in the
CC original reference genome assembly, contains in fact two paralogous
CC genes in tandem, SEC10a (At5g12370) and SEC10b (At5g12365), and a
CC sequence segment of 7 kb in length is missing from the reference genome
CC sequence. {ECO:0000305|PubMed:24728280}.
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DR EMBL; AF479280; AAL87123.1; -; mRNA.
DR EMBL; HG764169; CDJ79774.3; -; Genomic_DNA.
DR EMBL; CP002688; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; X5JB51; -.
DR SMR; X5JB51; -.
DR PeptideAtlas; X5JB51; -.
DR PRIDE; X5JB51; -.
DR Araport; AT5G12365; -.
DR PRO; PR:X5JB51; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; X5JB51; baseline and differential.
DR GO; GO:0005829; C:cytosol; IDA:UniProtKB.
DR GO; GO:0000145; C:exocyst; IDA:UniProtKB.
DR GO; GO:0070062; C:extracellular exosome; IDA:UniProtKB.
DR GO; GO:0016020; C:membrane; IDA:UniProtKB.
DR GO; GO:0005886; C:plasma membrane; IDA:UniProtKB.
DR GO; GO:0009506; C:plasmodesma; IDA:UniProtKB.
DR GO; GO:0060321; P:acceptance of pollen; IMP:UniProtKB.
DR GO; GO:0006887; P:exocytosis; IBA:GO_Central.
DR GO; GO:0006893; P:Golgi to plasma membrane transport; IBA:GO_Central.
DR InterPro; IPR009976; Sec10-like.
DR PANTHER; PTHR12100; PTHR12100; 1.
DR Pfam; PF07393; Sec10; 2.
PE 1: Evidence at protein level;
KW Coiled coil; Cytoplasm; Exocytosis; Reference proteome; Secreted;
KW Transport.
FT CHAIN 1..829
FT /note="Exocyst complex component SEC10b"
FT /id="PRO_0000438626"
FT COILED 244..266
FT /evidence="ECO:0000255"
SQ SEQUENCE 829 AA; 90256 MW; 0CCCB0EE9CA5F536 CRC64;
MTERIRARGP RSSSVNSVPL ILDIEDFKGD FSFDALFGNL VNDLLPSFLD EEADSGDGHG
NIAGVDGLTN GHLRGQSAPL SSAPFFPEVD GLLSLFKDAC KELVDLRKQV DGRLNTLKKE
VSTQDSKHRK TLTEIEKGVD GLFESFARLD GRISSVGQTA AKIGDHLQSA DAQRETASQT
IDLIKYLMEF NGSPGDLMEL SALFSDDSRV AEAASIAQKL RSFAEEDIGR QGASTAAGNA
TPGRGLEVAV ANLQDYCNEL ENRLLSRFDA ASQRRDLSTM SECAKILSQF NRGTSAMQHY
VATRPMFIDV EVMNSDIRLV LGDHGSQPSP SNVARGLSAL FKEITDTVRK EAATITAVFP
TPNEVMAILV QRVLEQRVTG ILDKILAKPS LMSPPPVQEG GLLLYLRMLA VAYERTQELA
KDLRAVGCGD LDVEDLTESL FSSHKDEYPE HERASLKQLY QAKMEELRAE SQQVSESSGT
IGRSKGASIS SSLQQISVTF VTEFVRWNEE AITRCTLFSS QPATLAANVK AIFTCLLDQV
SVYITEGLER ARDSLSEAAA LRERFVLGTS VSRRVAAAAA SAAEAAAAAG ESSFKSFMVA
VQRCGSSVAI VQQYFANSIS RLLLPVDGAH AASCEEMSTA LSKAEAAAYK GLQQCIETVM
AEVDRLLSSE QKSTDYRSPD DGIASDHRPT NACIRVVAYL SRVLESAFTA LEGLNKQAFL
TELGNRLEKL LLTHWQKFTF NPSGGLRLKR DLNEYVGFVK SFGAPSVDEK FELLGIIANV
FIVAPDSLPT LFEGSPSIRK DAQRFIQLRE DYKSAKLATK LSSLWPSLS