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SEH1_PONAB
ID   SEH1_PONAB              Reviewed;         360 AA.
AC   Q5RAN6;
DT   05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT   21-DEC-2004, sequence version 1.
DT   25-MAY-2022, entry version 92.
DE   RecName: Full=Nucleoporin SEH1 {ECO:0000305};
DE   AltName: Full=GATOR complex protein SEH1 {ECO:0000305};
DE   AltName: Full=Nup107-160 subcomplex subunit SEH1;
GN   Name=SEH1L;
OS   Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Pongo.
OX   NCBI_TaxID=9601;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Kidney;
RG   The German cDNA consortium;
RL   Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Component of the Nup107-160 subcomplex of the nuclear pore
CC       complex (NPC). The Nup107-160 subcomplex is required for the assembly
CC       of a functional NPC. The Nup107-160 subcomplex is also required for
CC       normal kinetochore microtubule attachment, mitotic progression and
CC       chromosome segregation. This subunit plays a role in recruitment of the
CC       Nup107-160 subcomplex to the kinetochore.
CC       {ECO:0000250|UniProtKB:Q96EE3}.
CC   -!- FUNCTION: As a component of the GATOR subcomplex GATOR2, functions
CC       within the amino acid-sensing branch of the TORC1 signaling pathway.
CC       Indirectly activates mTORC1 and the TORC1 signaling pathway through the
CC       inhibition of the GATOR1 subcomplex. It is negatively regulated by the
CC       upstream amino acid sensors SESN2 and CASTOR1.
CC       {ECO:0000250|UniProtKB:Q96EE3}.
CC   -!- SUBUNIT: Component of the Nup107-160 subcomplex of the nuclear pore
CC       complex (NPC). The Nup107-160 subcomplex includes NUP160, NUP133,
CC       NUP107, NUP98, NUP85, NUP43, NUP37, SEH1 and SEC13. The SEH1 subunit
CC       appears to be only weakly associated with the Nup107-160 subcomplex.
CC       Within the GATOR complex, component of the GATOR2 subcomplex, made of
CC       MIOS, SEC13, SEH1L, WDR24 and WDR59. The GATOR complex strongly
CC       interacts with RRAGA/RRAGC and RRAGB/RRAGC heterodimers. The GATOR2
CC       complex interacts with CASTOR2 and CASTOR1; the interaction is
CC       negatively regulated by arginine. The GATOR2 complex interacts with
CC       SESN1, SESN2 and SESN3; the interaction is negatively regulated by
CC       amino acids. {ECO:0000250|UniProtKB:Q96EE3}.
CC   -!- SUBCELLULAR LOCATION: Chromosome, centromere, kinetochore
CC       {ECO:0000250|UniProtKB:Q96EE3}. Nucleus, nuclear pore complex
CC       {ECO:0000250|UniProtKB:Q96EE3}. Lysosome membrane
CC       {ECO:0000250|UniProtKB:Q96EE3}.
CC   -!- SIMILARITY: Belongs to the WD repeat SEC13 family. {ECO:0000305}.
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DR   EMBL; CR858979; CAH91174.1; -; mRNA.
DR   RefSeq; NP_001125688.1; NM_001132216.1.
DR   AlphaFoldDB; Q5RAN6; -.
DR   SMR; Q5RAN6; -.
DR   STRING; 9601.ENSPPYP00000010077; -.
DR   GeneID; 100172610; -.
DR   KEGG; pon:100172610; -.
DR   CTD; 81929; -.
DR   eggNOG; KOG2445; Eukaryota.
DR   InParanoid; Q5RAN6; -.
DR   OrthoDB; 944756at2759; -.
DR   Proteomes; UP000001595; Unplaced.
DR   GO; GO:0000776; C:kinetochore; IEA:UniProtKB-KW.
DR   GO; GO:0005765; C:lysosomal membrane; ISS:UniProtKB.
DR   GO; GO:0031080; C:nuclear pore outer ring; ISS:UniProtKB.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   GO; GO:0051315; P:attachment of mitotic spindle microtubules to kinetochore; ISS:UniProtKB.
DR   GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR   GO; GO:0007080; P:mitotic metaphase plate congression; ISS:UniProtKB.
DR   GO; GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
DR   GO; GO:0006999; P:nuclear pore organization; ISS:UniProtKB.
DR   GO; GO:1904263; P:positive regulation of TORC1 signaling; IEA:InterPro.
DR   GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR   Gene3D; 2.130.10.10; -; 1.
DR   InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR   InterPro; IPR037597; Nucleoporin_Seh1.
DR   InterPro; IPR037363; Sec13/Seh1_fam.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR001680; WD40_repeat.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   PANTHER; PTHR11024; PTHR11024; 1.
DR   PANTHER; PTHR11024:SF3; PTHR11024:SF3; 1.
DR   Pfam; PF00400; WD40; 2.
DR   PRINTS; PR00320; GPROTEINBRPT.
DR   SMART; SM00320; WD40; 5.
DR   SUPFAM; SSF50978; SSF50978; 1.
DR   PROSITE; PS50082; WD_REPEATS_2; 2.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 2.
PE   2: Evidence at transcript level;
KW   Cell cycle; Cell division; Centromere; Chromosome; Chromosome partition;
KW   Isopeptide bond; Kinetochore; Lysosome; Membrane; Mitosis; mRNA transport;
KW   Nuclear pore complex; Nucleus; Phosphoprotein; Protein transport;
KW   Reference proteome; Repeat; Translocation; Transport; Ubl conjugation;
KW   WD repeat.
FT   CHAIN           1..360
FT                   /note="Nucleoporin SEH1"
FT                   /id="PRO_0000373807"
FT   REPEAT          10..49
FT                   /note="WD 1"
FT   REPEAT          55..96
FT                   /note="WD 2"
FT   REPEAT          111..152
FT                   /note="WD 3"
FT   REPEAT          160..210
FT                   /note="WD 4"
FT   REPEAT          217..258
FT                   /note="WD 5"
FT   REPEAT          276..315
FT                   /note="WD 6"
FT   REGION          324..360
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         179
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q96EE3"
FT   MOD_RES         190
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q96EE3"
FT   CROSSLNK        12
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:Q96EE3"
SQ   SEQUENCE   360 AA;  39671 MW;  1286531774C7C9B9 CRC64;
     MFVARSIAAD HKDLIHDVSF DFHGRRMATC SSDQSVKVWD KSESGDWHCT ASWKTHSGSV
     WRVTWAHPEF GQVLASCSFD RTAAVWEEIV GESNDKLRGQ SHWVKRTTLV DSRTSVTDVK
     FAPKHMGLML ATCSADGIVR IYEAPDVMNL SQWSLQHEIS CKLSCSCISW NPSSSRAHSP
     MIAVGSDDSS PNAMAKVQIF EYNENTRKYA KAETLMTVTD PVHDIAFAPN LGRSFHILAI
     ATKDVRIFTL KPVRKELTSS GGPTKFEIHI VAHFDNHNSQ VWRVSWNITG TVLASSGDDG
     CVRLWKANYM DNWKCTGILK GNGSPVNGSS QQGTSNPSLG SNIPSLQNSL NGSSAGRKHS
 
 
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