SF3BA_ARATH
ID SF3BA_ARATH Reviewed; 87 AA.
AC Q9LW64;
DT 11-FEB-2002, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Uncharacterized protein At3g23325;
GN OrderedLocusNames=At3g23325; ORFNames=MLM24.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- MISCELLANEOUS: Was originally fused with At3g23315 to form At3g23320.
CC -!- SIMILARITY: Belongs to the SF3B5 family. {ECO:0000305}.
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DR EMBL; AB015474; BAB02276.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76752.1; -; Genomic_DNA.
DR EMBL; AY063990; AAL36346.1; -; mRNA.
DR EMBL; AY096688; AAM20322.1; -; mRNA.
DR RefSeq; NP_566727.1; NM_113235.3.
DR AlphaFoldDB; Q9LW64; -.
DR SMR; Q9LW64; -.
DR BioGRID; 7245; 22.
DR IntAct; Q9LW64; 1.
DR STRING; 3702.AT3G23325.1; -.
DR PaxDb; Q9LW64; -.
DR PRIDE; Q9LW64; -.
DR ProteomicsDB; 232579; -.
DR DNASU; 821913; -.
DR EnsemblPlants; AT3G23325.1; AT3G23325.1; AT3G23325.
DR GeneID; 821913; -.
DR Gramene; AT3G23325.1; AT3G23325.1; AT3G23325.
DR KEGG; ath:AT3G23325; -.
DR Araport; AT3G23325; -.
DR TAIR; locus:505006364; AT3G23325.
DR eggNOG; KOG3485; Eukaryota.
DR HOGENOM; CLU_138804_3_1_1; -.
DR InParanoid; Q9LW64; -.
DR OMA; SHVGHYD; -.
DR OrthoDB; 1632322at2759; -.
DR PhylomeDB; Q9LW64; -.
DR PRO; PR:Q9LW64; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LW64; baseline and differential.
DR Genevisible; Q9LW64; AT.
DR GO; GO:0071011; C:precatalytic spliceosome; IBA:GO_Central.
DR GO; GO:0005686; C:U2 snRNP; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR InterPro; IPR009846; SF3b5/RDS3-10.
DR InterPro; IPR017089; Splicing_factor_3B_subunit_5.
DR PANTHER; PTHR20978; PTHR20978; 1.
DR Pfam; PF07189; SF3b10; 1.
DR PIRSF; PIRSF037010; Splicing_factor_3B_subunit_5; 1.
PE 3: Inferred from homology;
KW Reference proteome.
FT CHAIN 1..87
FT /note="Uncharacterized protein At3g23325"
FT /id="PRO_0000220760"
SQ SEQUENCE 87 AA; 10177 MW; 902B372E0D020AB5 CRC64;
MQASDRFNIN SQLEHLQAKY VGTGHADLSR FEWTVNIQRD SYASYIGHYP MLSYFAIAEN
ESIGRERYNF MQKMLLPCGL PPEREDE