SG1_ARATH
ID SG1_ARATH Reviewed; 316 AA.
AC Q9LS48;
DT 07-JAN-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 142.
DE RecName: Full=protein SLOW GREEN 1, chloroplastic {ECO:0000303|PubMed:24420572};
DE Flags: Precursor;
GN Name=SG1 {ECO:0000303|PubMed:24420572};
GN OrderedLocusNames=At3g18420 {ECO:0000312|Araport:AT3G18420};
GN ORFNames=MYF24.13 {ECO:0000312|EMBL:BAB01108.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP FUNCTION, MUTAGENESIS OF ARG-181, SUBCELLULAR LOCATION, AND TISSUE
RP SPECIFICITY.
RC STRAIN=cv. Columbia;
RX PubMed=24420572; DOI=10.1093/jxb/ert463;
RA Hu Z., Xu F., Guan L., Qian P., Liu Y., Zhang H., Huang Y., Hou S.;
RT "The tetratricopeptide repeat-containing protein slow green1 is required
RT for chloroplast development in Arabidopsis.";
RL J. Exp. Bot. 65:1111-1123(2014).
CC -!- FUNCTION: Required for the early stage of chloroplast development. May
CC be involved in chloroplast protein biosynthesis and/or degradation.
CC {ECO:0000269|PubMed:24420572}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000269|PubMed:24420572}. Note=Accumulates as spots in the
CC chloroplast. {ECO:0000269|PubMed:24420572}.
CC -!- TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in newly
CC formed green tissues. {ECO:0000269|PubMed:24420572}.
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DR EMBL; AB026658; BAB01108.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76095.1; -; Genomic_DNA.
DR EMBL; AY037258; AAK59859.1; -; mRNA.
DR EMBL; AY077665; AAL76143.1; -; mRNA.
DR EMBL; AY086309; AAM64381.1; -; mRNA.
DR RefSeq; NP_566609.1; NM_112727.2.
DR AlphaFoldDB; Q9LS48; -.
DR SMR; Q9LS48; -.
DR STRING; 3702.AT3G18420.1; -.
DR PaxDb; Q9LS48; -.
DR PRIDE; Q9LS48; -.
DR ProteomicsDB; 234490; -.
DR EnsemblPlants; AT3G18420.1; AT3G18420.1; AT3G18420.
DR GeneID; 821371; -.
DR Gramene; AT3G18420.1; AT3G18420.1; AT3G18420.
DR KEGG; ath:AT3G18420; -.
DR Araport; AT3G18420; -.
DR TAIR; locus:2095037; AT3G18420.
DR eggNOG; ENOG502QVER; Eukaryota.
DR HOGENOM; CLU_044919_1_0_1; -.
DR InParanoid; Q9LS48; -.
DR OMA; QANTIQP; -.
DR OrthoDB; 1247297at2759; -.
DR PhylomeDB; Q9LS48; -.
DR PRO; PR:Q9LS48; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LS48; baseline and differential.
DR Genevisible; Q9LS48; AT.
DR GO; GO:0009507; C:chloroplast; IDA:UniProtKB.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0009658; P:chloroplast organization; IMP:UniProtKB.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR Pfam; PF13174; TPR_6; 1.
DR SMART; SM00028; TPR; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR PROSITE; PS50005; TPR; 4.
DR PROSITE; PS50293; TPR_REGION; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Plastid; Reference proteome; Repeat; TPR repeat;
KW Transit peptide.
FT TRANSIT 1..39
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 40..316
FT /note="protein SLOW GREEN 1, chloroplastic"
FT /evidence="ECO:0000255"
FT /id="PRO_0000431588"
FT REPEAT 118..151
FT /note="TPR 1"
FT /evidence="ECO:0000255"
FT REPEAT 152..185
FT /note="TPR 2"
FT /evidence="ECO:0000255"
FT REPEAT 226..259
FT /note="TPR 3"
FT /evidence="ECO:0000255"
FT REPEAT 261..293
FT /note="TPR 4"
FT /evidence="ECO:0000255"
FT MUTAGEN 181
FT /note="R->K: Abnormal chloroplast development and slow
FT greening."
FT /evidence="ECO:0000269|PubMed:24420572"
SQ SEQUENCE 316 AA; 35631 MW; 4077D5ED98EB7C95 CRC64;
MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK
SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK LSEITPLSEL LDSTPEAVET
LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ
RNPLSFEALF ENALLMDRSG EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK
NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
RTPLSKMKLF GGSEEN
