SHR1_ORYSJ
ID SHR1_ORYSJ Reviewed; 602 AA.
AC Q8H2X8; A0A0P0X8C3; A3BLN3; B7F6J7; B9FY58; Q0D526;
DT 08-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 08-APR-2008, sequence version 2.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=Protein SHORT-ROOT 1 {ECO:0000303|PubMed:17446396};
DE Short=OsSHR1 {ECO:0000303|PubMed:17446396};
DE AltName: Full=GRAS family protein 38 {ECO:0000303|PubMed:15316287};
DE Short=OsGRAS-38 {ECO:0000303|PubMed:15316287};
GN Name=SHR1 {ECO:0000303|PubMed:17446396};
GN OrderedLocusNames=Os07g0586900 {ECO:0000312|EMBL:BAT02401.1},
GN LOC_Os07g39820 {ECO:0000305};
GN ORFNames=OJ1047_C01.1 {ECO:0000312|EMBL:BAD30442.1},
GN OJ1113_E01.116 {ECO:0000312|EMBL:BAC20900.1},
GN OsJ_24926 {ECO:0000312|EMBL:EEE67495.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
RC STRAIN=cv. Taichung 65;
RX PubMed=12974810; DOI=10.1046/j.1365-313x.2003.01856.x;
RA Kamiya N., Itoh J., Morikami A., Nagato Y., Matsuoka M.;
RT "The SCARECROW gene's role in asymmetric cell divisions in rice plants.";
RL Plant J. 36:45-54(2003).
RN [7]
RP GENE FAMILY.
RX PubMed=15316287; DOI=10.1023/b:plan.0000038256.89809.57;
RA Tian C., Wan P., Sun S., Li J., Chen M.;
RT "Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.";
RL Plant Mol. Biol. 54:519-532(2004).
RN [8]
RP FUNCTION, TISSUE SPECIFICITY, AND INTERACTION WITH SCR1.
RC STRAIN=cv. Nipponbare;
RX PubMed=17446396; DOI=10.1126/science.1139531;
RA Cui H., Levesque M.P., Vernoux T., Jung J.W., Paquette A.J.,
RA Gallagher K.L., Wang J.Y., Blilou I., Scheres B., Benfey P.N.;
RT "An evolutionarily conserved mechanism delimiting SHR movement defines a
RT single layer of endodermis in plants.";
RL Science 316:421-425(2007).
RN [9]
RP INTERACTION WITH SMOS1.
RX PubMed=28069545; DOI=10.1016/j.molp.2016.12.013;
RA Hirano K., Yoshida H., Aya K., Kawamura M., Hayashi M., Hobo T.,
RA Sato-Izawa K., Kitano H., Ueguchi-Tanaka M., Matsuoka M.;
RT "SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING form a
RT complex to integrate auxin and brassinosteroid signaling in rice.";
RL Mol. Plant 10:590-604(2017).
CC -!- FUNCTION: Transcription factor required for the asymmetric cell
CC division involved in radial pattern formation in roots. Essential for
CC both cell division and cell specification.
CC {ECO:0000269|PubMed:17446396}.
CC -!- SUBUNIT: Interacts with SCR1 (PubMed:17446396). Interacts with SMOS1
CC (PubMed:28069545). {ECO:0000269|PubMed:17446396,
CC ECO:0000269|PubMed:28069545}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in leaves and roots. Detected in the
CC stele, the endodermis and part of the cortex.
CC {ECO:0000269|PubMed:12974810, ECO:0000269|PubMed:17446396}.
CC -!- DEVELOPMENTAL STAGE: In P3 leaf primordium, expressed ubiquitously in
CC the L1 layer and in the inner cells at lower levels. Not limited to the
CC developing stomata until the last cell divisions.
CC {ECO:0000269|PubMed:12974810}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC20900.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD30442.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EEE67495.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AP003985; BAD30442.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP005437; BAC20900.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF22047.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02401.1; -; Genomic_DNA.
DR EMBL; CM000144; EEE67495.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK120959; BAH00245.1; -; mRNA.
DR RefSeq; XP_015645491.1; XM_015790005.1.
DR AlphaFoldDB; Q8H2X8; -.
DR SMR; Q8H2X8; -.
DR BioGRID; 812790; 3.
DR IntAct; Q8H2X8; 2.
DR STRING; 4530.OS07T0586900-01; -.
DR PaxDb; Q8H2X8; -.
DR PRIDE; Q8H2X8; -.
DR EnsemblPlants; Os07t0586900-01; Os07t0586900-01; Os07g0586900.
DR GeneID; 4343753; -.
DR Gramene; Os07t0586900-01; Os07t0586900-01; Os07g0586900.
DR KEGG; osa:4343753; -.
DR eggNOG; ENOG502QQN4; Eukaryota.
DR HOGENOM; CLU_011924_5_1_1; -.
DR InParanoid; Q8H2X8; -.
DR OMA; TRRDIVI; -.
DR OrthoDB; 709637at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q8H2X8; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0008356; P:asymmetric cell division; IBA:GO_Central.
DR GO; GO:0055072; P:iron ion homeostasis; IBA:GO_Central.
DR GO; GO:0048366; P:leaf development; IBA:GO_Central.
DR GO; GO:0045930; P:negative regulation of mitotic cell cycle; IBA:GO_Central.
DR GO; GO:0009956; P:radial pattern formation; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 1: Evidence at protein level;
KW Developmental protein; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..602
FT /note="Protein SHORT-ROOT 1"
FT /id="PRO_0000329424"
FT DOMAIN 183..601
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 12..69
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 101..145
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 165..185
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 190..253
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 272..349
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 365..401
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 411..517
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 520..601
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 311..315
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COMPBIAS 12..55
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 165..179
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 602 AA; 64709 MW; 62DAFEF75EB3549C CRC64;
MDTLFRLVSL QAASEQQQQQ QQSASYNSRS TTSSGSRSSS HQTNASYSYY HHSSNSGGGG
GGGGGYYYGG QQPPPSQYYY LEPYQEECGN APHHQLYMDE DFSSSSSSRH FHHGARVQQQ
QPPASSTPTG TAPTPPLSTS STAAGAGHGL FEAADLSFPP DLNLDFSSPA SSSGGGTASS
GAVGGGGGGR WASQLLLECA RSVAARDSQR VQQLMWMLNE LASPYGDVEQ KLASYFLQGL
FARLTASGPR TLRTLAAASD RNTSFDSTRR TALRFQELSP WSSFGHVAAN GAILESFLEV
AAAASSETQR FHILDLSNTF CTQWPTLLEA LATRSADETP HLSITTVVSA APSAPTAAVQ
RVMREIGQRM EKFARLMGVP FRFRAVHHSG DLAELDLDAL DLREGGATTA LAVNCVNSLR
GVVPGRARRR DAFAASLRRL DPRVVTVVEE EADLVASDPD ASSATEEGGD TEAAFLKVFG
EGLRFFSAYM DSLEESFPKT SNERLALERG AGRAIVDLVS CPASESMERR ETAASWARRM
RSAGFSPVAF SEDVADDVRS LLRRYREGWS MREAGTDDSA AGAGVFLAWK EQPLVWASAW
RP
