SHR2_ORYSJ
ID SHR2_ORYSJ Reviewed; 603 AA.
AC Q75I13; A3AJE3; C7J0D7;
DT 08-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=Protein SHORT-ROOT 2;
DE AltName: Full=OsSHR2;
GN Name=SHR2; OrderedLocusNames=Os03g0433200, LOC_Os03g31880;
GN ORFNames=OsJ_010915, OSJNBb0031F05.14;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP LACK OF INTERACTION WITH SCR1.
RC STRAIN=cv. Nipponbare;
RX PubMed=17446396; DOI=10.1126/science.1139531;
RA Cui H., Levesque M.P., Vernoux T., Jung J.W., Paquette A.J.,
RA Gallagher K.L., Wang J.Y., Blilou I., Scheres B., Benfey P.N.;
RT "An evolutionarily conserved mechanism delimiting SHR movement defines a
RT single layer of endodermis in plants.";
RL Science 316:421-425(2007).
CC -!- FUNCTION: Putative transcription factor involved in asymmetric cell
CC division. {ECO:0000250}.
CC -!- SUBUNIT: Does not interact with SCR1.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
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DR EMBL; AC133861; AAS07303.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96780.1; -; Genomic_DNA.
DR EMBL; AP008209; BAH92215.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84831.1; -; Genomic_DNA.
DR EMBL; CM000140; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015629293.1; XM_015773807.1.
DR AlphaFoldDB; Q75I13; -.
DR SMR; Q75I13; -.
DR BioGRID; 1214754; 3.
DR STRING; 4530.OS03T0433200-00; -.
DR PaxDb; Q75I13; -.
DR PRIDE; Q75I13; -.
DR EnsemblPlants; Os03t0433200-01; Os03t0433200-01; Os03g0433200.
DR GeneID; 9269685; -.
DR Gramene; Os03t0433200-01; Os03t0433200-01; Os03g0433200.
DR KEGG; osa:9269685; -.
DR eggNOG; ENOG502QQN4; Eukaryota.
DR HOGENOM; CLU_011924_5_1_1; -.
DR InParanoid; Q75I13; -.
DR OMA; HRMMKEI; -.
DR OrthoDB; 709637at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q75I13; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0008356; P:asymmetric cell division; IBA:GO_Central.
DR GO; GO:0055072; P:iron ion homeostasis; IBA:GO_Central.
DR GO; GO:0048366; P:leaf development; IBA:GO_Central.
DR GO; GO:0045930; P:negative regulation of mitotic cell cycle; IBA:GO_Central.
DR GO; GO:0009956; P:radial pattern formation; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 1: Evidence at protein level;
KW Developmental protein; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..603
FT /note="Protein SHORT-ROOT 2"
FT /id="PRO_0000329426"
FT DOMAIN 179..602
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 11..58
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 106..140
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 186..249
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 268..354
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 370..406
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 416..514
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 517..602
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 318..322
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COMPBIAS 30..47
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 106..122
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 603 AA; 64248 MW; 89A8EC5BD4ED2923 CRC64;
MDTLFRLVSL HHHHHHQHAA SPSPPDQPHK SYPSSRGSTS SPSSHHTHNH TYYHHSHSHY
NNNSNTNYYY QGGGGGGGGY YYAEEQQPAA YLEECGNGHQ FYMDEDFSSS SSSRQFHSGT
GAPSSAPVPP PPSATTSSAG GHGLFEAADF SFPQVDISLD FGGSPAVPSS SGAGAGAGAA
PSSSGRWAAQ LLMECARAVA GRDSQRVQQL MWMLNELASP YGDVDQKLAS YFLQGLFARL
TTSGPRTLRT LATASDRNAS FDSTRRTALK FQELSPWTPF GHVAANGAIL ESFLEAAAAG
AAASSSSSSS SSTPPTRLHI LDLSNTFCTQ WPTLLEALAT RSSDDTPHLS ITTVVPTAAP
SAAAQRVMRE IGQRLEKFAR LMGVPFSFRA VHHSGDLADL DLAALDLREG GATAALAVNC
VNALRGVARG RDAFVASLRR LEPRVVTVVE EEADLAAPEA DASSEADTDA AFVKVFGEGL
RFFSAYMDSL EESFPKTSNE RLSLERAVGR AIVDLVSCPA SQSAERRETA ASWARRMRSA
GFSPAAFSED VADDVRSLLR RYKEGWSMRD AGGATDDAAG AAAAGAFLAW KEQPVVWASA
WKP
