BH062_ORYSJ
ID BH062_ORYSJ Reviewed; 265 AA.
AC Q69V10; Q6XNP2;
DT 07-JUN-2017, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 123.
DE RecName: Full=Transcription factor BHLH062 {ECO:0000305};
DE AltName: Full=Basic helix-loop-helix protein 1 {ECO:0000303|PubMed:12920519};
DE Short=OsbHLH1 {ECO:0000303|PubMed:12920519};
DE AltName: Full=Basic helix-loop-helix protein 62 {ECO:0000303|PubMed:16896230};
DE Short=OsbHLH062 {ECO:0000303|PubMed:16896230};
DE AltName: Full=bHLH transcription factor bHLH062 {ECO:0000305};
GN Name=BHLH062 {ECO:0000303|PubMed:16896230};
GN Synonyms=BHLH1 {ECO:0000303|PubMed:12920519};
GN OrderedLocusNames=Os07g0628500 {ECO:0000312|EMBL:BAF22264.1},
GN LOC_Os07g43530 {ECO:0000305};
GN ORFNames=OsJ_25221 {ECO:0000312|EMBL:EEE67640.1},
GN P0011H09.105 {ECO:0000312|EMBL:BAD30518.1},
GN P0506F02.119 {ECO:0000312|EMBL:BAD30583.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=12920519; DOI=10.1007/s00122-003-1378-x;
RA Wang Y.J., Zhang Z.G., He X.J., Zhou H.L., Wen Y.X., Dai J.X., Zhang J.S.,
RA Chen S.Y.;
RT "A rice transcription factor OsbHLH1 is involved in cold stress response.";
RL Theor. Appl. Genet. 107:1402-1409(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=18987217; DOI=10.1104/pp.108.128579;
RA Yilmaz A., Nishiyama M.Y., Fuentes B.G., Souza G.M., Janies D., Gray J.,
RA Grotewold E.;
RT "GRASSIUS: a platform for comparative regulatory genomics across the
RT grasses.";
RL Plant Physiol. 149:171-180(2009).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16896230; DOI=10.1104/pp.106.080580;
RA Li X., Duan X., Jiang H., Sun Y., Tang Y., Yuan Z., Guo J., Liang W.,
RA Chen L., Yin J., Ma H., Wang J., Zhang D.;
RT "Genome-wide analysis of basic/helix-loop-helix transcription factor family
RT in rice and Arabidopsis.";
RL Plant Physiol. 141:1167-1184(2006).
RN [9]
RP FUNCTION, INTERACTION WITH TIFY11A/JAZ9, AND SUBCELLULAR LOCATION.
RX PubMed=25617318; DOI=10.1016/j.plantsci.2014.12.010;
RA Wu H., Ye H., Yao R., Zhang T., Xiong L.;
RT "OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and
RT modulates salt stress tolerance in rice.";
RL Plant Sci. 232:1-12(2015).
CC -!- FUNCTION: Transcription factor that plays a positive role in salt
CC stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter
CC of some potassium ion transporter genes to regulate potassium
CC homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
CC -!- SUBUNIT: Interacts with TIFY11A/JAZ9. {ECO:0000269|PubMed:25617318}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00981,
CC ECO:0000269|PubMed:25617318}.
CC -!- SIMILARITY: Belongs to the bHLH protein family.
CC -!- CAUTION: Contains a degenerate basic motif not likely to bind DNA.
CC {ECO:0000255|PROSITE-ProRule:PRU00981}.
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DR EMBL; AY222337; AAP12519.1; -; mRNA.
DR EMBL; HQ858856; ADX60268.1; -; mRNA.
DR EMBL; AP004260; BAD30518.1; -; Genomic_DNA.
DR EMBL; AP004306; BAD30583.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22264.1; -; Genomic_DNA.
DR EMBL; CM000144; EEE67640.1; -; Genomic_DNA.
DR EMBL; AK070963; BAG92229.1; -; mRNA.
DR EMBL; AP014963; BAT02757.1; -; Genomic_DNA.
DR RefSeq; XP_015645391.1; XM_015789905.1.
DR RefSeq; XP_015645392.1; XM_015789906.1.
DR RefSeq; XP_015645393.1; XM_015789907.1.
DR AlphaFoldDB; Q69V10; -.
DR SMR; Q69V10; -.
DR STRING; 4530.OS07T0628500-01; -.
DR PaxDb; Q69V10; -.
DR PRIDE; Q69V10; -.
DR EnsemblPlants; Os07t0628500-01; Os07t0628500-01; Os07g0628500.
DR EnsemblPlants; Os07t0628500-02; Os07t0628500-02; Os07g0628500.
DR GeneID; 4343984; -.
DR Gramene; Os07t0628500-01; Os07t0628500-01; Os07g0628500.
DR Gramene; Os07t0628500-02; Os07t0628500-02; Os07g0628500.
DR KEGG; osa:4343984; -.
DR eggNOG; ENOG502RYQ6; Eukaryota.
DR HOGENOM; CLU_053417_1_0_1; -.
DR InParanoid; Q69V10; -.
DR OMA; CDKKAPK; -.
DR OrthoDB; 1207684at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IC:Gramene.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IC:Gramene.
DR Gene3D; 4.10.280.10; -; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR Pfam; PF00010; HLH; 1.
DR SUPFAM; SSF47459; SSF47459; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 1: Evidence at protein level;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Stress response;
KW Transcription; Transcription regulation.
FT CHAIN 1..265
FT /note="Transcription factor BHLH062"
FT /id="PRO_0000440330"
FT DOMAIN 35..85
FT /note="bHLH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 35..48
FT /note="Basic motif; degenerate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 49..85
FT /note="Helix-loop-helix motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 200..265
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 75..130
FT /evidence="ECO:0000255"
FT COMPBIAS 243..258
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 117
FT /note="N -> Y (in Ref. 1; AAP12519)"
FT /evidence="ECO:0000305"
FT CONFLICT 179
FT /note="Q -> K (in Ref. 1; AAP12519)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 265 AA; 29686 MW; FA2D500AFE2B6BD2 CRC64;
MVPRDRVNAA AAGGGGEGRL VQSGIVNKKC DKKAPKRIHK SEREKLKRDK QNDLFNELGN
LLEPDRQNNG KACVLGETTR ILKDLLSQVE SLRKENSSLK NESHYVALER NELHDDNSML
RTEILELQNE LRTRMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQL
PVIIEQHYAA TPRELQLFPE SATSEDSEPS QEHGISDHVT RPQPRYPTPT ATLPVNLFPV
FPGRQDQQCS SGTSGTNEED RIGRS
