BH079_ARATH
ID BH079_ARATH Reviewed; 281 AA.
AC Q9LV17;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 130.
DE RecName: Full=Transcription factor bHLH79;
DE AltName: Full=Basic helix-loop-helix protein 79;
DE Short=AtbHLH79;
DE Short=bHLH 79;
DE AltName: Full=Transcription factor EN 81;
DE AltName: Full=bHLH transcription factor bHLH079;
GN Name=BHLH79; Synonyms=EN81; OrderedLocusNames=At5g62610; ORFNames=MRG21.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 188-281, GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=12679534; DOI=10.1093/molbev/msg088;
RA Heim M.A., Jakoby M., Werber M., Martin C., Weisshaar B., Bailey P.C.;
RT "The basic helix-loop-helix transcription factor family in plants: a
RT genome-wide study of protein structure and functional diversity.";
RL Mol. Biol. Evol. 20:735-747(2003).
RN [6]
RP GENE FAMILY.
RX PubMed=12897250; DOI=10.1105/tpc.013839;
RA Toledo-Ortiz G., Huq E., Quail P.H.;
RT "The Arabidopsis basic/helix-loop-helix transcription factor family.";
RL Plant Cell 15:1749-1770(2003).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=14600211; DOI=10.1105/tpc.151140;
RA Bailey P.C., Martin C., Toledo-Ortiz G., Quail P.H., Huq E., Heim M.A.,
RA Jakoby M., Werber M., Weisshaar B.;
RT "Update on the basic helix-loop-helix transcription factor gene family in
RT Arabidopsis thaliana.";
RL Plant Cell 15:2497-2502(2003).
CC -!- SUBUNIT: Homodimer. {ECO:0000305}.
CC -!- INTERACTION:
CC Q9LV17; Q93W88: BHLH137; NbExp=3; IntAct=EBI-15191993, EBI-15198405;
CC Q9LV17; Q9C8Z9: BHLH148; NbExp=5; IntAct=EBI-15191993, EBI-4434374;
CC Q9LV17; O80482: BHLH149; NbExp=4; IntAct=EBI-15191993, EBI-15193669;
CC Q9LV17; Q3EAI1-2: BHLH60; NbExp=3; IntAct=EBI-15191993, EBI-15194889;
CC Q9LV17; Q7XHI9: BHLH84; NbExp=3; IntAct=EBI-15191993, EBI-15194255;
CC Q9LV17; Q9LXD8: HEC3; NbExp=3; IntAct=EBI-15191993, EBI-1536734;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00981}.
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DR EMBL; AB020751; BAA97208.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97630.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM68566.1; -; Genomic_DNA.
DR EMBL; AY072104; AAL59926.1; -; mRNA.
DR EMBL; AY123023; AAM67556.1; -; mRNA.
DR EMBL; AY084578; AAM61143.1; -; mRNA.
DR EMBL; AF488611; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_001330306.1; NM_001345555.1.
DR RefSeq; NP_201067.1; NM_125656.3.
DR AlphaFoldDB; Q9LV17; -.
DR SMR; Q9LV17; -.
DR BioGRID; 21625; 28.
DR IntAct; Q9LV17; 27.
DR STRING; 3702.AT5G62610.1; -.
DR PaxDb; Q9LV17; -.
DR PRIDE; Q9LV17; -.
DR ProteomicsDB; 240467; -.
DR EnsemblPlants; AT5G62610.1; AT5G62610.1; AT5G62610.
DR EnsemblPlants; AT5G62610.2; AT5G62610.2; AT5G62610.
DR GeneID; 836382; -.
DR Gramene; AT5G62610.1; AT5G62610.1; AT5G62610.
DR Gramene; AT5G62610.2; AT5G62610.2; AT5G62610.
DR KEGG; ath:AT5G62610; -.
DR Araport; AT5G62610; -.
DR TAIR; locus:2172209; AT5G62610.
DR eggNOG; ENOG502QSEM; Eukaryota.
DR HOGENOM; CLU_064391_1_0_1; -.
DR InParanoid; Q9LV17; -.
DR OMA; PKDFGAQ; -.
DR OrthoDB; 1369201at2759; -.
DR PhylomeDB; Q9LV17; -.
DR PRO; PR:Q9LV17; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LV17; baseline and differential.
DR Genevisible; Q9LV17; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR Gene3D; 4.10.280.10; -; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR024097; bHLH_ZIP_TF.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR PANTHER; PTHR12565; PTHR12565; 1.
DR Pfam; PF00010; HLH; 1.
DR SMART; SM00353; HLH; 1.
DR SUPFAM; SSF47459; SSF47459; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..281
FT /note="Transcription factor bHLH79"
FT /id="PRO_0000358771"
FT DOMAIN 159..209
FT /note="bHLH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 47..167
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 141..167
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 281 AA; 30570 MW; 12766B37C44CB4EA CRC64;
MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFTRS EHSGNKDVSA
AEESTVTDLT AGWGSRKTRD LNSEDDSSKM VSSSSSGNEL KESGDKKRKL CGSESGNGDG
SMRPEGETSS GGGGSKATEQ KNKPEPPKDY IHVRARRGQA TDRHSLAERA RREKISEKMT
ALQDIIPGCN KIIGKALVLD EIINYIQSLQ RQVEFLSMKL EVVNSGASTG PTIGVFPSGD
LGTLPIDVHR TIYEQQEANE TRVSQPEWLH MQVDGNFNRT T
