BH089_ORYSJ
ID BH089_ORYSJ Reviewed; 265 AA.
AC Q84T08; F1DK89;
DT 07-JUN-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 140.
DE RecName: Full=Transcription factor BHLH089 {ECO:0000305};
DE AltName: Full=Basic helix-loop-helix protein 89 {ECO:0000303|PubMed:16896230};
DE Short=OsbHLH089 {ECO:0000303|PubMed:16896230};
DE AltName: Full=bHLH transcription factor bHLH089 {ECO:0000305};
GN Name=BHLH089 {ECO:0000303|PubMed:16896230};
GN OrderedLocusNames=Os03g0802900 {ECO:0000312|EMBL:BAF13519.1},
GN LOC_Os03g58830 {ECO:0000312|EMBL:ABF99407.1};
GN ORFNames=OSJNBa0087C10.10 {ECO:0000312|EMBL:AAO72370.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=18987217; DOI=10.1104/pp.108.128579;
RA Yilmaz A., Nishiyama M.Y., Fuentes B.G., Souza G.M., Janies D., Gray J.,
RA Grotewold E.;
RT "GRASSIUS: a platform for comparative regulatory genomics across the
RT grasses.";
RL Plant Physiol. 149:171-180(2009).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16896230; DOI=10.1104/pp.106.080580;
RA Li X., Duan X., Jiang H., Sun Y., Tang Y., Yuan Z., Guo J., Liang W.,
RA Chen L., Yin J., Ma H., Wang J., Zhang D.;
RT "Genome-wide analysis of basic/helix-loop-helix transcription factor family
RT in rice and Arabidopsis.";
RL Plant Physiol. 141:1167-1184(2006).
RN [7]
RP INTERACTION WITH RSS3.
RC STRAIN=cv. Nipponbare;
RX PubMed=23715469; DOI=10.1105/tpc.113.112052;
RA Toda Y., Tanaka M., Ogawa D., Kurata K., Kurotani K., Habu Y., Ando T.,
RA Sugimoto K., Mitsuda N., Katoh E., Abe K., Miyao A., Hirochika H.,
RA Hattori T., Takeda S.;
RT "RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH
RT factors and regulates jasmonate-induced gene expression and root cell
RT elongation.";
RL Plant Cell 25:1709-1725(2013).
CC -!- FUNCTION: Transcription factor that may regulate jasmonate-regulated
CC genes. {ECO:0000250|UniProtKB:Q69WS3}.
CC -!- SUBUNIT: Interacts with RSS3. {ECO:0000269|PubMed:23715469}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00981}.
CC -!- SIMILARITY: Belongs to the bHLH protein family.
CC -!- CAUTION: Contains a degenerate basic motif not likely to bind DNA.
CC {ECO:0000255|PROSITE-ProRule:PRU00981}.
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DR EMBL; HQ858847; ADX60259.1; -; mRNA.
DR EMBL; AC108906; AAO72370.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF99407.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13519.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS86910.1; -; Genomic_DNA.
DR RefSeq; XP_015629323.1; XM_015773837.1.
DR AlphaFoldDB; Q84T08; -.
DR STRING; 4530.OS03T0802900-01; -.
DR PaxDb; Q84T08; -.
DR PRIDE; Q84T08; -.
DR EnsemblPlants; Os03t0802900-01; Os03t0802900-01; Os03g0802900.
DR GeneID; 4334471; -.
DR Gramene; Os03t0802900-01; Os03t0802900-01; Os03g0802900.
DR KEGG; osa:4334471; -.
DR eggNOG; ENOG502QSEM; Eukaryota.
DR HOGENOM; CLU_064391_1_1_1; -.
DR InParanoid; Q84T08; -.
DR OMA; PKDFGAQ; -.
DR OrthoDB; 1369201at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IC:Gramene.
DR Gene3D; 4.10.280.10; -; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR024097; bHLH_ZIP_TF.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR PANTHER; PTHR12565; PTHR12565; 1.
DR Pfam; PF00010; HLH; 1.
DR SMART; SM00353; HLH; 1.
DR SUPFAM; SSF47459; SSF47459; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..265
FT /note="Transcription factor BHLH089"
FT /id="PRO_0000440331"
FT DOMAIN 142..192
FT /note="bHLH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 1..132
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 142..155
FT /note="Basic motif; degenerate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 156..192
FT /note="Helix-loop-helix motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT CONFLICT 74
FT /note="T -> A (in Ref. 1; ADX60259)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 265 AA; 28018 MW; 1B8CF0933FD1E47A CRC64;
MDPAPTLAAE LWRTPYLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG GGAGRRRQRE
APALEDDSSR IVSTSGGGGG GQDLTDSEAK RFKASKSSGD NSSLRTEAET DSRNASKSGD
QNPPPPEPPK QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAS
VLDEIINYIQ ALQRQVEFLS MKLEAVNAHV NNGIEAFPPK DFGAQVYNTA PGLTFDPQTP
REYAQGSTPS EWLHMQIGGT YERVT
