BH092_ARATH
ID BH092_ARATH Reviewed; 247 AA.
AC Q9FIX5;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Transcription factor bHLH92;
DE AltName: Full=Basic helix-loop-helix protein 92;
DE Short=AtbHLH92;
DE Short=bHLH 92;
DE AltName: Full=Transcription factor EN 22;
DE AltName: Full=bHLH transcription factor bHLH092;
GN Name=BHLH92; Synonyms=EN22; OrderedLocusNames=At5g43650; ORFNames=K9D7.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10048488; DOI=10.1093/dnares/5.6.379;
RA Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence
RT features of the regions of 1,081,958 bp covered by seventeen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:379-391(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12679534; DOI=10.1093/molbev/msg088;
RA Heim M.A., Jakoby M., Werber M., Martin C., Weisshaar B., Bailey P.C.;
RT "The basic helix-loop-helix transcription factor family in plants: a
RT genome-wide study of protein structure and functional diversity.";
RL Mol. Biol. Evol. 20:735-747(2003).
RN [5]
RP GENE FAMILY.
RX PubMed=12897250; DOI=10.1105/tpc.013839;
RA Toledo-Ortiz G., Huq E., Quail P.H.;
RT "The Arabidopsis basic/helix-loop-helix transcription factor family.";
RL Plant Cell 15:1749-1770(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=14600211; DOI=10.1105/tpc.151140;
RA Bailey P.C., Martin C., Toledo-Ortiz G., Quail P.H., Huq E., Heim M.A.,
RA Jakoby M., Werber M., Weisshaar B.;
RT "Update on the basic helix-loop-helix transcription factor gene family in
RT Arabidopsis thaliana.";
RL Plant Cell 15:2497-2502(2003).
CC -!- SUBUNIT: Homodimer. {ECO:0000305}.
CC -!- INTERACTION:
CC Q9FIX5; Q9XGN1: TTG1; NbExp=8; IntAct=EBI-15199233, EBI-395803;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00981}.
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DR EMBL; AB016875; BAB11628.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94991.1; -; Genomic_DNA.
DR EMBL; AY065390; AAL38831.1; -; mRNA.
DR EMBL; AY096718; AAM20352.1; -; mRNA.
DR RefSeq; NP_199178.1; NM_123731.5.
DR AlphaFoldDB; Q9FIX5; -.
DR SMR; Q9FIX5; -.
DR BioGRID; 19635; 6.
DR IntAct; Q9FIX5; 6.
DR STRING; 3702.AT5G43650.1; -.
DR PaxDb; Q9FIX5; -.
DR PRIDE; Q9FIX5; -.
DR EnsemblPlants; AT5G43650.1; AT5G43650.1; AT5G43650.
DR GeneID; 834385; -.
DR Gramene; AT5G43650.1; AT5G43650.1; AT5G43650.
DR KEGG; ath:AT5G43650; -.
DR Araport; AT5G43650; -.
DR TAIR; locus:2158392; AT5G43650.
DR eggNOG; ENOG502S1P8; Eukaryota.
DR HOGENOM; CLU_080571_0_0_1; -.
DR InParanoid; Q9FIX5; -.
DR OMA; QELEWLK; -.
DR OrthoDB; 1242471at2759; -.
DR PhylomeDB; Q9FIX5; -.
DR PRO; PR:Q9FIX5; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FIX5; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR CDD; cd11393; bHLH_AtbHLH_like; 1.
DR Gene3D; 4.10.280.10; -; 1.
DR InterPro; IPR044658; bHLH92/bHLH041-like.
DR InterPro; IPR045239; bHLH95_bHLH.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR PANTHER; PTHR46665; PTHR46665; 1.
DR Pfam; PF00010; HLH; 1.
DR SMART; SM00353; HLH; 1.
DR SUPFAM; SSF47459; SSF47459; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..247
FT /note="Transcription factor bHLH92"
FT /id="PRO_0000358783"
FT DOMAIN 85..134
FT /note="bHLH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
SQ SEQUENCE 247 AA; 29012 MW; 24DE851A1B26E362 CRC64;
MDNFFLGLSC QEENNFWDLI VADISGDRSV SVPIRSAFRS YMKDTELRMM SPKISSSKVN
VKKRMVNLLR KNWEEKKNTV APEKERSRRH MLKERTRREK QKQSYLALHS LLPFATKNDK
NSIVEKAVDE IAKLQRLKKE LVRRIKVIEE KSAKDGHDEM SETKVRVNLK EPLSGLDSML
EALHYLKSMG TKLKTVHANF SPQEFSATMT IETQIRGEEV EKRVERRLQE TEWKLLFLPE
ASFYKDY
