BH094_ORYSJ
ID BH094_ORYSJ Reviewed; 256 AA.
AC Q69WS3; A0A0N7KN27; Q0D801;
DT 07-JUN-2017, integrated into UniProtKB/Swiss-Prot.
DT 07-JUN-2017, sequence version 2.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=Transcription factor BHLH094 {ECO:0000305};
DE AltName: Full=Basic helix-loop-helix protein 94 {ECO:0000303|PubMed:16896230};
DE Short=OsbHLH094 {ECO:0000303|PubMed:16896230};
DE AltName: Full=bHLH transcription factor bHLH094 {ECO:0000305};
GN Name=BHLH094 {ECO:0000303|PubMed:16896230};
GN OrderedLocusNames=Os07g0193800 {ECO:0000312|EMBL:BAT00450.1},
GN LOC_Os07g09590 {ECO:0000305};
GN ORFNames=OJ1118_E12.15 {ECO:0000312|EMBL:BAD30156.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16896230; DOI=10.1104/pp.106.080580;
RA Li X., Duan X., Jiang H., Sun Y., Tang Y., Yuan Z., Guo J., Liang W.,
RA Chen L., Yin J., Ma H., Wang J., Zhang D.;
RT "Genome-wide analysis of basic/helix-loop-helix transcription factor family
RT in rice and Arabidopsis.";
RL Plant Physiol. 141:1167-1184(2006).
RN [5]
RP FUNCTION, INTERACTION WITH RSS3, SUBUNIT, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=23715469; DOI=10.1105/tpc.113.112052;
RA Toda Y., Tanaka M., Ogawa D., Kurata K., Kurotani K., Habu Y., Ando T.,
RA Sugimoto K., Mitsuda N., Katoh E., Abe K., Miyao A., Hirochika H.,
RA Hattori T., Takeda S.;
RT "RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH
RT factors and regulates jasmonate-induced gene expression and root cell
RT elongation.";
RL Plant Cell 25:1709-1725(2013).
CC -!- FUNCTION: Transcription factor that forms a ternary complex with RSS3
CC and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes.
CC {ECO:0000269|PubMed:23715469}.
CC -!- SUBUNIT: Interacts with RSS3. Forms a ternary complex with RSS3 and
CC TIFY11A/JAZ9 in the nucleus. {ECO:0000269|PubMed:23715469}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00981,
CC ECO:0000269|PubMed:23715469}.
CC -!- SIMILARITY: Belongs to the bHLH protein family.
CC -!- CAUTION: Contains a degenerate basic motif not likely to bind DNA.
CC {ECO:0000255|PROSITE-ProRule:PRU00981}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD30156.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF21022.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAT00450.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003743; BAD30156.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF21022.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014963; BAT00450.1; ALT_SEQ; Genomic_DNA.
DR RefSeq; XP_015645823.1; XM_015790337.1.
DR AlphaFoldDB; Q69WS3; -.
DR STRING; 4530.OS07T0193800-01; -.
DR PRIDE; Q69WS3; -.
DR GeneID; 4342637; -.
DR KEGG; osa:4342637; -.
DR eggNOG; ENOG502QSEM; Eukaryota.
DR InParanoid; Q69WS3; -.
DR OrthoDB; 1369201at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IC:Gramene.
DR Gene3D; 4.10.280.10; -; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR024097; bHLH_ZIP_TF.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR PANTHER; PTHR12565; PTHR12565; 1.
DR Pfam; PF00010; HLH; 1.
DR SMART; SM00353; HLH; 1.
DR SUPFAM; SSF47459; SSF47459; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..256
FT /note="Transcription factor BHLH094"
FT /id="PRO_0000440332"
FT DOMAIN 134..184
FT /note="bHLH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 1..125
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 134..147
FT /note="Basic motif; degenerate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 148..184
FT /note="Helix-loop-helix motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT COMPBIAS 41..55
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 78..98
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 99..113
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 256 AA; 27583 MW; 1D6A25C2AC577119 CRC64;
MDPAPSLAAE LWRPHHHRHH FEASSVVTDQ GSGSRGGGGS GRRRPRSDAG PEDDDLSKVV
STSAASGGGG GGGQDSDAPE AKRLKPMKSS DKNDSLRTEA GTDSGNSSKA ADKNATPPEP
PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK ASVLDEIINY
IQSLQHQVEF LSMKLEAVNS HMINGIVAFP SKDFGAQPYN TAAGLTFDPQ TTREFAQGST
SEWLHMQIGN AYERVT
