SIM12_DANRE
ID SIM12_DANRE Reviewed; 91 AA.
AC Q5BKW8;
DT 14-DEC-2011, integrated into UniProtKB/Swiss-Prot.
DT 12-APR-2005, sequence version 1.
DT 03-AUG-2022, entry version 79.
DE RecName: Full=Small integral membrane protein 12;
GN Name=smim12; ORFNames=si:ch73-31g16.1, zgc:103571;
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen;
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S.,
RA Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N.,
RA Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J.,
RA Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J.,
RA Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D.,
RA McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S.,
RA Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E.,
RA Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A.,
RA Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P.,
RA Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C.,
RA Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C.,
RA Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M.,
RA Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G.,
RA Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F.,
RA Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M.,
RA Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M.,
RA de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C.,
RA Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the human
RT genome.";
RL Nature 496:498-503(2013).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Liver;
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the SMIM12 family. {ECO:0000305}.
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DR EMBL; CT027831; CAN88103.1; -; Genomic_DNA.
DR EMBL; BC090902; AAH90902.1; -; mRNA.
DR RefSeq; NP_001013546.1; NM_001013528.3.
DR AlphaFoldDB; Q5BKW8; -.
DR SMR; Q5BKW8; -.
DR STRING; 7955.ENSDARP00000093933; -.
DR PaxDb; Q5BKW8; -.
DR Ensembl; ENSDART00000103159; ENSDARP00000093933; ENSDARG00000070358.
DR GeneID; 541401; -.
DR KEGG; dre:541401; -.
DR CTD; 113444; -.
DR ZFIN; ZDB-GENE-050320-101; smim12.
DR eggNOG; ENOG502S2AD; Eukaryota.
DR GeneTree; ENSGT00390000009435; -.
DR HOGENOM; CLU_160787_0_0_1; -.
DR InParanoid; Q5BKW8; -.
DR OMA; GMDSTQV; -.
DR OrthoDB; 1641442at2759; -.
DR PhylomeDB; Q5BKW8; -.
DR TreeFam; TF328614; -.
DR PRO; PR:Q5BKW8; -.
DR Proteomes; UP000000437; Genome assembly.
DR Proteomes; UP000814640; Chromosome 19.
DR Bgee; ENSDARG00000070358; Expressed in blastula and 29 other tissues.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR031933; UPF0767.
DR PANTHER; PTHR28599; PTHR28599; 1.
DR Pfam; PF15990; UPF0767; 1.
PE 3: Inferred from homology;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..91
FT /note="Small integral membrane protein 12"
FT /id="PRO_0000414324"
FT TRANSMEM 12..34
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 91 AA; 10527 MW; F33D9FBC655DCB08 CRC64;
MWPIFWTAMR TYAPYVTFPV AFVVGAVGYH LEWFIRGTPN TPGEERGIAE LREDRKLEEL
NGRDSTQVLS LKDKLEFTPR AVLERNRAVK S