SKA1_ORYSJ
ID SKA1_ORYSJ Reviewed; 276 AA.
AC Q7XAM0; A0A0P0X5V8;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=Spindle and kinetochore-associated protein 1 homolog;
GN OrderedLocusNames=Os07g0484500, LOC_Os07g30110;
GN ORFNames=OJ1136_F08.123, OJ1753_E03.102, OsJ_24262;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SIMILARITY: Belongs to the SKA1 family. {ECO:0000305}.
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DR EMBL; AP003849; BAC81170.1; -; Genomic_DNA.
DR EMBL; AP005465; BAD31464.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF21564.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT01508.1; -; Genomic_DNA.
DR EMBL; CM000144; EEE67174.1; -; Genomic_DNA.
DR EMBL; AK064741; BAG89183.1; -; mRNA.
DR RefSeq; XP_015645750.1; XM_015790264.1.
DR RefSeq; XP_015645751.1; XM_015790265.1.
DR AlphaFoldDB; Q7XAM0; -.
DR SMR; Q7XAM0; -.
DR STRING; 4530.OS07T0484500-01; -.
DR PaxDb; Q7XAM0; -.
DR PRIDE; Q7XAM0; -.
DR DNASU; 4343243; -.
DR EnsemblPlants; Os07t0484500-01; Os07t0484500-01; Os07g0484500.
DR GeneID; 4343243; -.
DR Gramene; Os07t0484500-01; Os07t0484500-01; Os07g0484500.
DR KEGG; osa:4343243; -.
DR eggNOG; KOG4832; Eukaryota.
DR HOGENOM; CLU_087423_0_0_1; -.
DR InParanoid; Q7XAM0; -.
DR OMA; YQEQTNH; -.
DR OrthoDB; 1354933at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q7XAM0; OS.
DR GO; GO:0072686; C:mitotic spindle; IBA:GO_Central.
DR GO; GO:0000940; C:outer kinetochore; IBA:GO_Central.
DR GO; GO:0005876; C:spindle microtubule; IBA:GO_Central.
DR GO; GO:0008017; F:microtubule binding; IBA:GO_Central.
DR GO; GO:0051301; P:cell division; IBA:GO_Central.
DR GO; GO:0007059; P:chromosome segregation; IBA:GO_Central.
DR GO; GO:0000278; P:mitotic cell cycle; IBA:GO_Central.
DR GO; GO:0031110; P:regulation of microtubule polymerization or depolymerization; IBA:GO_Central.
DR Gene3D; 1.10.10.1890; -; 1.
DR InterPro; IPR009829; SKA1.
DR InterPro; IPR042031; SKA1-MBD.
DR PANTHER; PTHR28573; PTHR28573; 1.
DR Pfam; PF07160; SKA1; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Reference proteome.
FT CHAIN 1..276
FT /note="Spindle and kinetochore-associated protein 1
FT homolog"
FT /id="PRO_0000373893"
FT COILED 48..78
FT /evidence="ECO:0000255"
SQ SEQUENCE 276 AA; 31002 MW; 7B9A6A2CFADD34BB CRC64;
MDAGDASRLG ESLDAVSAAF QSRVMELQEL VLARNMYPAT AIPDLAAVDV SLTAMEAQLQ
AVRRRLQEER EAFPKAKKLV QQSLKQQRRL QLMLANMPTG MREDVFATPL EHNSSMMFPE
SLNFSSAVPE VRDHDLKIKE EPTAPPKKGR GPAPRWYIST EELDSLSSYM RGRLTLEKVN
IAINEVASYA DGNAHLVACP KKKLSEDTWE KALELRDIAA RESVKGRHFF LETDIKGPGL
KLDTTGKAIL TVLRHLGRFQ ETRIGHHRVF ILSKQQ