SKIPA_ORYSJ
ID SKIPA_ORYSJ Reviewed; 607 AA.
AC Q6K8D9;
DT 25-OCT-2017, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=SNW/SKI-interacting protein A {ECO:0000305};
DE Short=OsSKIPa {ECO:0000303|PubMed:19339499};
GN Name=SKIPA {ECO:0000303|PubMed:19339499};
GN OrderedLocusNames=Os02g0759800 {ECO:0000312|EMBL:BAF10098.1},
GN LOC_Os02g52250 {ECO:0000305};
GN ORFNames=OJ1175_B01.11 {ECO:0000312|EMBL:BAD19399.1},
GN OsJ_08462 {ECO:0000312|EMBL:EAZ24692.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP FUNCTION, INTERACTION WITH FLO6/SIP4, SUBCELLULAR LOCATION, TISSUE
RP SPECIFICITY, AND INDUCTION.
RX PubMed=19339499; DOI=10.1073/pnas.0901940106;
RA Hou X., Xie K., Yao J., Qi Z., Xiong L.;
RT "A homolog of human ski-interacting protein in rice positively regulates
RT cell viability and stress tolerance.";
RL Proc. Natl. Acad. Sci. U.S.A. 106:6410-6415(2009).
RN [6]
RP INTERACTION WITH DIS1.
RX PubMed=22067990; DOI=10.4161/psb.6.11.17916;
RA Ning Y., Xie Q., Wang G.L.;
RT "OsDIS1-mediated stress response pathway in rice.";
RL Plant Signal. Behav. 6:1684-1686(2011).
CC -!- FUNCTION: Acts as positive regulator of drought and salt tolerance.
CC Acts as positive regulator of cell viability.
CC {ECO:0000269|PubMed:19339499}.
CC -!- SUBUNIT: Interacts with FLO6/SIP4 (PubMed:19339499). Interacts with
CC DIS1 (PubMed:22067990). {ECO:0000269|PubMed:19339499,
CC ECO:0000269|PubMed:22067990}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:19339499}.
CC -!- TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:19339499}.
CC -!- INDUCTION: Induced by drought, cold and salt stresses. Induced by
CC wounding and treatment with abscisic acid (ABA), jasmonate (JA),
CC salicylic acid (SA) and ethylene. {ECO:0000269|PubMed:19339499}.
CC -!- MISCELLANEOUS: Plants silencing SKIPA exhibit growth arrest and reduced
CC cell viability. Plants overexpressing SKIPA exhibit drought resistance
CC and significantly improved growth performance in medium containing
CC stress agents (abscisic acid, salt, or mannitol).
CC {ECO:0000269|PubMed:19339499}.
CC -!- SIMILARITY: Belongs to the SNW family. {ECO:0000305}.
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DR EMBL; AP004159; BAD19399.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF10098.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS81021.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ24692.1; -; Genomic_DNA.
DR RefSeq; XP_015626352.1; XM_015770866.1.
DR AlphaFoldDB; Q6K8D9; -.
DR SMR; Q6K8D9; -.
DR STRING; 4530.OS02T0759800-01; -.
DR PaxDb; Q6K8D9; -.
DR PRIDE; Q6K8D9; -.
DR EnsemblPlants; Os02t0759800-01; Os02t0759800-01; Os02g0759800.
DR GeneID; 4330796; -.
DR Gramene; Os02t0759800-01; Os02t0759800-01; Os02g0759800.
DR KEGG; osa:4330796; -.
DR eggNOG; KOG2441; Eukaryota.
DR HOGENOM; CLU_006601_2_1_1; -.
DR InParanoid; Q6K8D9; -.
DR OMA; WRDSNTL; -.
DR OrthoDB; 1455730at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR ExpressionAtlas; Q6K8D9; baseline and differential.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0005681; C:spliceosomal complex; IEA:InterPro.
DR GO; GO:0036002; F:pre-mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:EnsemblPlants.
DR GO; GO:1901002; P:positive regulation of response to salt stress; IMP:UniProtKB.
DR GO; GO:1902584; P:positive regulation of response to water deprivation; IMP:UniProtKB.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants.
DR GO; GO:0042752; P:regulation of circadian rhythm; IEA:EnsemblPlants.
DR GO; GO:2000028; P:regulation of photoperiodism, flowering; IEA:EnsemblPlants.
DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants.
DR GO; GO:0010555; P:response to mannitol; IEA:EnsemblPlants.
DR GO; GO:0009651; P:response to salt stress; IEA:EnsemblPlants.
DR GO; GO:0010228; P:vegetative to reproductive phase transition of meristem; IEA:EnsemblPlants.
DR InterPro; IPR017862; SKI-int_prot_SKIP.
DR InterPro; IPR004015; SKI-int_prot_SKIP_SNW-dom.
DR PANTHER; PTHR12096; PTHR12096; 1.
DR Pfam; PF02731; SKIP_SNW; 1.
PE 1: Evidence at protein level;
KW Coiled coil; Nucleus; Reference proteome; Stress response.
FT CHAIN 1..607
FT /note="SNW/SKI-interacting protein A"
FT /id="PRO_0000442183"
FT REGION 29..77
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 178..205
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 190..353
FT /note="SNW"
FT /evidence="ECO:0000305"
FT REGION 217..265
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 327..434
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 516..607
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 313..349
FT /evidence="ECO:0000255"
FT COILED 391..418
FT /evidence="ECO:0000255"
FT COMPBIAS 327..345
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 367..434
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 516..553
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 607 AA; 67480 MW; 312A2099A0B6E388 CRC64;
MASLKELLPT PKAAASTFYD HSSDPWFKER YGGESAQSDA AAAAAKPSGP AKPVPPYGKR
GGFVPRRPED FGDGGAFPEI HVAQYPLGMG RRDEKGGSKI LALTVDAKGS VAFDAVVKQG
ENASKIVYSK HSDLVPKIAT ADSEATADDE EYQKQIEETT ERTKAALEKV VNVRLSAAQP
KNVPTHDSES KFIKYKPSQQ SAAFNSGAKE RIIRMSEMAQ DPLEPPKFKH KRVPRASGSP
PVPVMHSPPR PVTVKDQQDW KIPPCISNWK NPKGYTIPLD KRLAADGRGL QEVQINDNFA
KLSEALYVAE QKAREAVQMR SKVQRELQLK EKERKEQELR ALAQKARMER TGAPPAPTGV
PAGGGRGAVD DREEDMDLEQ PREQRRESRE EREARIERDR IREERRRERE RERRLEARDA
AMGKKSKLTR DRDRDVSEKI ALGMASTGGA KGGEVMYDQR LFNQDKGMDS GFATDDQYNI
YSKGLFTAQP TLSTLYRPKK DGDSDVYGDA DEQLEKVMKT DRFKPDKGFS GASERSGKRD
RPVEFDKQEE NDPFGLDQFL TEVKKGKKAV EKIGSGGAMR ASGGSSMRDD YEGGGSGRSR
INFERGR
