SKP20_ORYSJ
ID SKP20_ORYSJ Reviewed; 175 AA.
AC Q651E8; Q0IZZ6;
DT 08-MAY-2019, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=SKP1-like protein 20 {ECO:0000303|PubMed:24616269};
DE AltName: Full=SKP1-like 20 {ECO:0000305};
GN Name=SKP20 {ECO:0000305}; Synonyms=OSK20 {ECO:0000303|PubMed:24616269};
GN OrderedLocusNames=Os09g0539500 {ECO:0000312|EMBL:BAT09185.1},
GN LOC_Os09g36830 {ECO:0000305};
GN ORFNames=B1274F11.9 {ECO:0000312|EMBL:BAD46569.1},
GN OsJ_30167 {ECO:0000312|EMBL:EEE70133.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP INTERACTION WITH D3.
RX PubMed=24616269; DOI=10.1093/pcp/pcu045;
RA Zhao J., Wang T., Wang M., Liu Y., Yuan S., Gao Y., Yin L., Sun W.,
RA Peng L., Zhang W., Wan J., Li X.;
RT "DWARF3 participates in an SCF complex and associates with DWARF14 to
RT suppress rice shoot branching.";
RL Plant Cell Physiol. 55:1096-1109(2014).
RN [7]
RP INTERACTION WITH VIRUS P7-2 PROTEIN.
RX PubMed=28494021; DOI=10.1371/journal.pone.0177518;
RA Tao T., Zhou C.J., Wang Q., Chen X.R., Sun Q., Zhao T.Y., Ye J.C., Wang Y.,
RA Zhang Z.Y., Zhang Y.L., Guo Z.J., Wang X.B., Li D.W., Yu J.L., Han C.G.;
RT "Rice black streaked dwarf virus P7-2 forms a SCF complex through binding
RT to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the
RT gibberellin pathway.";
RL PLoS ONE 12:E0177518-E0177518(2017).
CC -!- FUNCTION: Involved in ubiquitination and subsequent proteasomal
CC degradation of target proteins. Together with CUL1, a RING-box and a F-
CC box protein, it forms a SCF E3 ubiquitin ligase complex. The functional
CC specificity of this complex depends on the type of F-box protein. In
CC the SCF complex, it serves as an adapter that links the F-box protein
CC to CUL1. {ECO:0000250|UniProtKB:Q9FHW7}.
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC {ECO:0000250|UniProtKB:Q9FHW7}.
CC -!- SUBUNIT: Part of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein
CC ligase complex (By similarity). Interacts with rice black streaked
CC dwarf virus RBSDV protein P7-2 (PubMed:28494021). Is able to form the
CC SCF complex together with CUL1 and the viral P7-2 protein (By
CC similarity). Interacts with D3 (PubMed:24616269).
CC {ECO:0000250|UniProtKB:Q6PL11, ECO:0000269|PubMed:24616269,
CC ECO:0000269|PubMed:28494021}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q9FHW7}.
CC -!- SIMILARITY: Belongs to the SKP1 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF25719.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP006149; BAD46569.1; -; Genomic_DNA.
DR EMBL; AP008215; BAF25719.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014965; BAT09185.1; -; Genomic_DNA.
DR EMBL; CM000146; EEE70133.1; -; Genomic_DNA.
DR EMBL; AK241794; BAH01115.1; -; mRNA.
DR RefSeq; XP_015651187.1; XM_015795701.1.
DR AlphaFoldDB; Q651E8; -.
DR SMR; Q651E8; -.
DR STRING; 4530.OS09T0539500-01; -.
DR PaxDb; Q651E8; -.
DR PRIDE; Q651E8; -.
DR EnsemblPlants; Os09t0539500-01; Os09t0539500-01; Os09g0539500.
DR GeneID; 4347721; -.
DR Gramene; Os09t0539500-01; Os09t0539500-01; Os09g0539500.
DR KEGG; osa:4347721; -.
DR eggNOG; KOG1724; Eukaryota.
DR HOGENOM; CLU_059252_6_1_1; -.
DR InParanoid; Q651E8; -.
DR OMA; NDFLPQE; -.
DR OrthoDB; 1412723at2759; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000007752; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0097602; F:cullin family protein binding; IBA:GO_Central.
DR GO; GO:0009867; P:jasmonic acid mediated signaling pathway; IEA:UniProt.
DR GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR GO; GO:0031146; P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR Gene3D; 3.30.710.10; -; 1.
DR InterPro; IPR016897; SKP1.
DR InterPro; IPR001232; SKP1-like.
DR InterPro; IPR036296; SKP1-like_dim_sf.
DR InterPro; IPR011333; SKP1/BTB/POZ_sf.
DR InterPro; IPR016072; Skp1_comp_dimer.
DR InterPro; IPR016073; Skp1_comp_POZ.
DR PANTHER; PTHR11165; PTHR11165; 1.
DR Pfam; PF01466; Skp1; 1.
DR Pfam; PF03931; Skp1_POZ; 1.
DR PIRSF; PIRSF028729; E3_ubiquit_lig_SCF_Skp; 1.
DR SMART; SM00512; Skp1; 1.
DR SUPFAM; SSF54695; SSF54695; 1.
DR SUPFAM; SSF81382; SSF81382; 1.
PE 1: Evidence at protein level;
KW Host-virus interaction; Nucleus; Reference proteome;
KW Ubl conjugation pathway.
FT CHAIN 1..175
FT /note="SKP1-like protein 20"
FT /id="PRO_0000446885"
FT REGION 117..175
FT /note="Interaction with the F-box domain of F-box proteins"
FT /evidence="ECO:0000250|UniProtKB:Q39255"
SQ SEQUENCE 175 AA; 19197 MW; D704DF05806C3330 CRC64;
MAAEAETKAM ITLRSCEGQV FEVAEAVAME SQTIRHMIED KCADTGIPLP NVSAKILSKV
IEYCSKHVEA RGGAAAAADG DAPAPAAVEA NKAVEDELKT FDAEFVKVDQ STLFDLILAA
NYLNIKGLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEVRREN QWAFE
