SLRL1_ORYSJ
ID SLRL1_ORYSJ Reviewed; 495 AA.
AC B7F9I5; B9EYB5; Q6S5L6; Q9AS97;
DT 25-MAY-2022, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 1.
DT 03-AUG-2022, entry version 70.
DE RecName: Full=Protein SLENDER RICE1-LIKE 1 {ECO:0000303|PubMed:16262715};
DE Short=Protein SLR1-LIKE 1 {ECO:0000303|PubMed:16262715};
GN Name=SLRL1 {ECO:0000303|PubMed:16262715};
GN OrderedLocusNames=Os01g0646300 {ECO:0000312|EMBL:BAS73406.1},
GN LOC_Os01g45860 {ECO:0000305};
GN ORFNames=P0038D11.11 {ECO:0000312|EMBL:BAC05533.1},
GN P0707D10.38 {ECO:0000312|EMBL:BAB40172.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Zhu Z., Sun C.;
RT "The cloning of osGAI gene.";
RL Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION BY GIBBERELLIN.
RX PubMed=16262715; DOI=10.1111/j.1365-313x.2005.02562.x;
RA Itoh H., Shimada A., Ueguchi-Tanaka M., Kamiya N., Hasegawa Y.,
RA Ashikari M., Matsuoka M.;
RT "Overexpression of a GRAS protein lacking the DELLA domain confers altered
RT gibberellin responses in rice.";
RL Plant J. 44:669-679(2005).
CC -!- FUNCTION: Probable transcriptional regulator that acts as a repressor
CC of the gibberellin (GA) signaling pathway (PubMed:16262715). Its
CC repressive activity is weaker than that of SLR1 (PubMed:16262715). Its
CC overexpression prevents the GA signaling pathway and induces a dwarf
CC phenotype (PubMed:16262715). {ECO:0000269|PubMed:16262715}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q7G7J6}.
CC -!- TISSUE SPECIFICITY: Expressed in elongating internodes and flowers
CC (PubMed:16262715). Expressed in floral meristem, stamen primordia and
CC tapetum in developing anthers (PubMed:16262715). Expressed at low
CC levels in roots, shoot apices and rachis (PubMed:16262715).
CC {ECO:0000269|PubMed:16262715}.
CC -!- INDUCTION: Induced by treatment with gibberellin (GA3).
CC {ECO:0000269|PubMed:16262715}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000255|PROSITE-
CC ProRule:PRU01191}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAR31213.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAB40172.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAC05533.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAF05619.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AY464568; AAR31213.1; ALT_INIT; mRNA.
DR EMBL; AP002910; BAB40172.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP003234; BAC05533.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP008207; BAF05619.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP014957; BAS73406.1; -; Genomic_DNA.
DR EMBL; AK242412; BAH01283.1; -; mRNA.
DR RefSeq; XP_015624056.1; XM_015768570.1.
DR AlphaFoldDB; B7F9I5; -.
DR SMR; B7F9I5; -.
DR STRING; 4530.OS01T0646300-01; -.
DR PaxDb; B7F9I5; -.
DR PRIDE; B7F9I5; -.
DR EnsemblPlants; Os01t0646300-01; Os01t0646300-01; Os01g0646300.
DR GeneID; 4325922; -.
DR Gramene; Os01t0646300-01; Os01t0646300-01; Os01g0646300.
DR KEGG; osa:4325922; -.
DR eggNOG; ENOG502QPMG; Eukaryota.
DR HOGENOM; CLU_011924_0_3_1; -.
DR InParanoid; B7F9I5; -.
DR OMA; RNSPIEM; -.
DR OrthoDB; 559310at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0009740; P:gibberellic acid mediated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 2: Evidence at transcript level;
KW Gibberellin signaling pathway; Nucleus; Reference proteome; Repressor;
KW Transcription; Transcription regulation.
FT CHAIN 1..495
FT /note="Protein SLENDER RICE1-LIKE 1"
FT /id="PRO_0000455645"
FT DOMAIN 77..449
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 84..140
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 158..223
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 237..269
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 279..371
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 374..449
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 451..495
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 189..193
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 287..291
FT /note="LXXLL motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COMPBIAS 455..495
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 78
FT /note="E -> A (in Ref. 1; AAR31213)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 495 AA; 52067 MW; 3D92439CF1B5FCF6 CRC64;
MAMDTFPFQW PMDPAASSGL DAGFLPPPAA VAPDDGVGYY DPPAGADVDA AALPEFAAAF
PPCAPDAAAA VLAMRREEEE VAGIRLVHLL MSCAGAIEAG DHALASAQLA DSHAALAAVS
AASGIGRVAV HFTTALSRRL FPSPVAPPTT DAEHAFLYHH FYEACPYLKF AHFTANQAIL
EAFHGCDHVH VIDFSLMQGL QWPALIQALA LRPGGPPFLR ITGIGPPSPT GRDELRDVGL
RLADLARSVR VRFSFRGVAA NSLDEVRPWM LQIAPGEAVA FNSVLQLHRL LGDPADQAPI
DAVLDCVASV RPKIFTVIEQ EADHNKTGFL DRFTEALFYY SAVFDSLDAA SASGGAGNAM
AEAYLQREIC DIVCGEGAAR RERHEPLSRW RDRLTRAGLS AVPLGSNALR QARMLVGLFS
GEGHSVEEAD GCLTLGWHGR PLFSASAWEA AGDGGGDNNN NSNSNVSGSS GSDSNNSGSS
NGKSSGARDG SSVCL
