SLRL2_ORYSJ
ID SLRL2_ORYSJ Reviewed; 500 AA.
AC Q6F368; Q0DFR5;
DT 25-MAY-2022, integrated into UniProtKB/Swiss-Prot.
DT 16-AUG-2004, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Protein SLENDER RICE1-LIKE 2 {ECO:0000303|PubMed:16262715};
DE Short=OsSLRL2 {ECO:0000303|PubMed:17521606};
DE Short=Protein SLR1-LIKE 2 {ECO:0000303|PubMed:16262715};
GN Name=SLRL2 {ECO:0000303|PubMed:16262715};
GN OrderedLocusNames=Os05g0574900 {ECO:0000312|EMBL:BAS95467.1},
GN LOC_Os05g49930 {ECO:0000305};
GN ORFNames=OJ1268_B08.12 {ECO:0000312|EMBL:AAT69589.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP TISSUE SPECIFICITY.
RX PubMed=16262715; DOI=10.1111/j.1365-313x.2005.02562.x;
RA Itoh H., Shimada A., Ueguchi-Tanaka M., Kamiya N., Hasegawa Y.,
RA Ashikari M., Matsuoka M.;
RT "Overexpression of a GRAS protein lacking the DELLA domain confers altered
RT gibberellin responses in rice.";
RL Plant J. 44:669-679(2005).
RN [7]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION BY GIBBERELLIN.
RX PubMed=17521606; DOI=10.1016/j.bbrc.2007.04.205;
RA Liu T., Gu J.Y., Xu C.J., Gao Y., An C.C.;
RT "Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis
RT plants.";
RL Biochem. Biophys. Res. Commun. 358:983-989(2007).
CC -!- FUNCTION: Probable transcriptional regulator that acts as a repressor
CC of the gibberellin (GA) signaling pathway (PubMed:17521606). Its
CC repressive activity is weaker than that of SLR1 (PubMed:17521606). Its
CC overexpression prevents the GA signaling pathway and induces a dwarf
CC phenotype in Arabidopsis thaliana plants (PubMed:17521606).
CC {ECO:0000269|PubMed:17521606}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q7G7J6}.
CC -!- TISSUE SPECIFICITY: Expressed at low levels in leaf blades, leaf
CC sheaths, rachis and flowers (PubMed:16262715). Expressed in the embryo
CC of immature seeds (PubMed:17521606). {ECO:0000269|PubMed:16262715,
CC ECO:0000269|PubMed:17521606}.
CC -!- INDUCTION: Induced by treatment with gibberellin (GA3).
CC {ECO:0000269|PubMed:17521606}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000255|PROSITE-
CC ProRule:PRU01191}.
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DR EMBL; AC098832; AAT69589.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF18308.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS95467.1; -; Genomic_DNA.
DR EMBL; AK107256; BAG98012.1; -; mRNA.
DR RefSeq; XP_015638486.1; XM_015783000.1.
DR AlphaFoldDB; Q6F368; -.
DR SMR; Q6F368; -.
DR STRING; 4530.OS05T0574900-01; -.
DR PaxDb; Q6F368; -.
DR PRIDE; Q6F368; -.
DR EnsemblPlants; Os05t0574900-01; Os05t0574900-01; Os05g0574900.
DR GeneID; 4339687; -.
DR Gramene; Os05t0574900-01; Os05t0574900-01; Os05g0574900.
DR KEGG; osa:4339687; -.
DR eggNOG; ENOG502QPMG; Eukaryota.
DR HOGENOM; CLU_011924_0_3_1; -.
DR InParanoid; Q6F368; -.
DR OMA; WHIMEEE; -.
DR OrthoDB; 559310at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0009740; P:gibberellic acid mediated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 2: Evidence at transcript level;
KW Gibberellin signaling pathway; Nucleus; Reference proteome; Repressor;
KW Transcription; Transcription regulation.
FT CHAIN 1..500
FT /note="Protein SLENDER RICE1-LIKE 2"
FT /id="PRO_0000455646"
FT DOMAIN 68..454
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 75..135
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 154..219
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 233..265
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 275..376
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 379..454
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 466..500
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 185..189
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 283..287
FT /note="LXXLL motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COMPBIAS 471..486
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 500 AA; 52995 MW; 6B6095D1E5ACEC5E CRC64;
MAQFGGFGGW SAMDVAAAAA AALGNVSGAV YHADPAAAVY ASLVPGMAVV PGRAPPSAVQ
IEAARRWKEL EKMALRSVNL MVTCAGAIQA GDYAAAAGSL SDAREIFAKM PTTRTGIGRV
LTHFADALAE RLFPAFPQSA PPPPPPRGEQ RELFRGFYEA GPYLKFAHLA ANQAILEAFE
GCNSVHVIDF ALTDGIQWPS LIQALAVRPG GPPFLRITGI GPHAAGNRDE LRDVGLRLAE
FARSCSVPFA FRGIAADQLD GLRPWMFQVA PGEAVAINSV LQLHRLLVDQ DAAAAASFPA
PIDGVLDWVA SMNPRVFTVV EQEADHNKSS LLERFTNSLF YYASMFDSLE AISRHGGGDG
AGNPLAEAYL QGEIADIVSR EGSSRVERHE QMPRWVERLR RGGMTQLPLG ATGLWQAAMQ
LREFSGAGFG VQENGGFLTL TWHSQRLYSA SAWRATAGKK MTMMASGAAD AMEESQNSNT
NGGGGGSSGG GHGALNQIMQ
