SLU7_DICDI
ID SLU7_DICDI Reviewed; 558 AA.
AC Q54TA0;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 24-MAY-2005, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=Pre-mRNA-splicing factor slu7;
GN Name=slu7; ORFNames=DDB_G0281901;
OS Dictyostelium discoideum (Slime mold).
OC Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales;
OC Dictyosteliaceae; Dictyostelium.
OX NCBI_TaxID=44689;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=15875012; DOI=10.1038/nature03481;
RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R.,
RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B.,
RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T.,
RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G.,
RA Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N.,
RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E.,
RA Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N.,
RA Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D.,
RA Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T.,
RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D.,
RA Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A.,
RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M.,
RA Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A.,
RA Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y.,
RA Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C.,
RA Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R.,
RA Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.;
RT "The genome of the social amoeba Dictyostelium discoideum.";
RL Nature 435:43-57(2005).
CC -!- FUNCTION: Participates in the second catalytic step of pre-mRNA
CC splicing, when the free hydroxyl group of exon I attacks the 3'-splice
CC site to generate spliced mRNA and the excised lariat intron.
CC {ECO:0000250}.
CC -!- SUBUNIT: Associated with the spliceosome. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the SLU7 family. {ECO:0000305}.
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DR EMBL; AAFI02000043; EAL66510.1; -; Genomic_DNA.
DR RefSeq; XP_640489.1; XM_635397.1.
DR AlphaFoldDB; Q54TA0; -.
DR SMR; Q54TA0; -.
DR STRING; 44689.DDB0233423; -.
DR PaxDb; Q54TA0; -.
DR EnsemblProtists; EAL66510; EAL66510; DDB_G0281901.
DR GeneID; 8623303; -.
DR KEGG; ddi:DDB_G0281901; -.
DR dictyBase; DDB_G0281901; slu7.
DR eggNOG; KOG2560; Eukaryota.
DR HOGENOM; CLU_019317_2_0_1; -.
DR InParanoid; Q54TA0; -.
DR OMA; KKPFYVD; -.
DR PhylomeDB; Q54TA0; -.
DR PRO; PR:Q54TA0; -.
DR Proteomes; UP000002195; Chromosome 3.
DR GO; GO:0005681; C:spliceosomal complex; ISS:dictyBase.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0030628; F:pre-mRNA 3'-splice site binding; IEA:InterPro.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR GO; GO:0008380; P:RNA splicing; IBA:GO_Central.
DR GO; GO:0000375; P:RNA splicing, via transesterification reactions; ISS:dictyBase.
DR InterPro; IPR021715; Slu7_dom.
DR InterPro; IPR039974; Splicing_factor_SLU7.
DR PANTHER; PTHR12942; PTHR12942; 1.
DR Pfam; PF11708; Slu7; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Metal-binding; mRNA processing; mRNA splicing; Nucleus;
KW Reference proteome; Spliceosome; Zinc; Zinc-finger.
FT CHAIN 1..558
FT /note="Pre-mRNA-splicing factor slu7"
FT /id="PRO_0000331203"
FT ZN_FING 94..111
FT /note="CCHC-type"
FT REGION 1..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 428..532
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 539..558
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 474..514
FT /evidence="ECO:0000255"
FT COMPBIAS 428..467
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 468..522
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 558 AA; 64719 MW; 40B422EC0214C0BA CRC64;
MASSISHRKT RDEYKKEKEL DEARKAGNAP AELDEEGKEI NPHIPEYILK APWYLNANKP
SLKHQRGVTK KEMDKGWYLR GATTGEAATK FRKGACENCG AMTHKTKDCC ERPRKLGAKF
TNDDIKPDEV IQKLELDYDS KRDPYNGYDP SSYKEVMDIY EKADTERKKK KLQELIKQHG
GGGDKKTPDV DETLSKELMD NEEKEGSYDS ETVAPIQKLD QKSRTTIRNL RIREDTAKYL
YNLDVNSAFY EPKSRSMRDN PLPNANPNDI KFAGDNFART SGETKEFRDL QRFAWEAQEK
GQDVDISSAP SQAALLHADF LRKKEQLKQQ TRNQLLTKYG GEEHLLKQEE IDKVPQSEIY
TEYSSSGKLI KGEEKIVKSK YEEDVFLNNH KSIWGSYWEN GQWGFACCRQ LIKNAYCTGE
KGKLLREKQL QQQQQHHIQQ ENQQDDDDNN TTTTTTTTTT SLLEQHLNKS NEDNDKHNKK
EGKRKDKKER KEKEEKLKKA LKDQDEENKK SVEKDERNIK YNSLSADDYN VSEEQMEAYN
LKRKRSDDPM ANFKDDSD