BIG1D_ARATH
ID BIG1D_ARATH Reviewed; 362 AA.
AC Q9LYH0; Q8LAU6;
DT 14-OCT-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Protein BIG GRAIN 1-like D {ECO:0000305};
GN OrderedLocusNames=At5g12050 {ECO:0000312|EMBL:AED91756.1};
GN ORFNames=F14F18.220 {ECO:0000312|EMBL:CAB87678.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Involved in auxin transport. Regulator of the auxin signaling
CC pathway. {ECO:0000250|UniProtKB:Q10R09}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250|UniProtKB:Q10R09}.
CC -!- SIMILARITY: Belongs to the BIG GRAIN 1 (BG1) plant protein family.
CC {ECO:0000305}.
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DR EMBL; AL163812; CAB87678.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91756.1; -; Genomic_DNA.
DR EMBL; AF370183; AAK43998.1; -; mRNA.
DR EMBL; AY059141; AAL15247.1; -; mRNA.
DR EMBL; AY087600; AAM65142.1; -; mRNA.
DR PIR; T48564; T48564.
DR RefSeq; NP_196766.1; NM_121243.3.
DR AlphaFoldDB; Q9LYH0; -.
DR STRING; 3702.AT5G12050.1; -.
DR PaxDb; Q9LYH0; -.
DR PRIDE; Q9LYH0; -.
DR ProteomicsDB; 240838; -.
DR EnsemblPlants; AT5G12050.1; AT5G12050.1; AT5G12050.
DR GeneID; 831078; -.
DR Gramene; AT5G12050.1; AT5G12050.1; AT5G12050.
DR KEGG; ath:AT5G12050; -.
DR Araport; AT5G12050; -.
DR TAIR; locus:2143049; AT5G12050.
DR eggNOG; ENOG502QWFY; Eukaryota.
DR HOGENOM; CLU_048356_1_0_1; -.
DR InParanoid; Q9LYH0; -.
DR OMA; SEQIMHR; -.
DR OrthoDB; 1090695at2759; -.
DR PhylomeDB; Q9LYH0; -.
DR PRO; PR:Q9LYH0; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LYH0; baseline and differential.
DR Genevisible; Q9LYH0; AT.
DR GO; GO:0005886; C:plasma membrane; ISS:UniProtKB.
DR GO; GO:0060918; P:auxin transport; ISS:UniProtKB.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0007623; P:circadian rhythm; IEP:TAIR.
DR GO; GO:0010929; P:positive regulation of auxin mediated signaling pathway; ISS:UniProtKB.
DR InterPro; IPR039621; BG1-like.
DR PANTHER; PTHR33541; PTHR33541; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Cell membrane; Membrane; Reference proteome;
KW Transport.
FT CHAIN 1..362
FT /note="Protein BIG GRAIN 1-like D"
FT /id="PRO_0000434447"
FT REGION 22..113
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 132..168
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 303..327
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 22..46
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 61..96
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 309..327
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 138
FT /note="E -> K (in Ref. 4; AAM65142)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 362 AA; 41032 MW; D6C57C5F1E31E04F CRC64;
MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF
FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK TKPRKTEDKT LFHQNRATRV
YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS
KQSNAVKSYP RKTSYDDSAY VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS
VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL
IL
