SM3L1_ARATH
ID SM3L1_ARATH Reviewed; 881 AA.
AC Q9FF61; F4JZ78; Q8RWB4; Q8RWC7;
DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 145.
DE RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1;
DE Short=SMARCA3-like protein 1;
DE EC=3.6.4.-;
GN OrderedLocusNames=At5g05130; ORFNames=MUG13.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-881.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=24265739; DOI=10.1371/journal.pone.0078982;
RA Xu R., Zhang S., Huang J., Zheng C.;
RT "Genome-wide comparative in silico analysis of the RNA helicase gene family
RT in Zea mays and Glycine max: a comparison with Arabidopsis and Oryza
RT sativa.";
RL PLoS ONE 8:E78982-E78982(2013).
CC -!- FUNCTION: Possesses intrinsic ATP-dependent nucleosome-remodeling
CC activity. This activity may be required for transcriptional activation
CC or repression of specific target promoters (By similarity).
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM13210.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AB005245; BAB11535.1; -; Genomic_DNA.
DR EMBL; CP002688; AED90832.2; -; Genomic_DNA.
DR EMBL; AY093185; AAM13184.1; -; mRNA.
DR EMBL; AY093211; AAM13210.1; ALT_INIT; mRNA.
DR EMBL; BT008802; AAP68241.1; -; mRNA.
DR RefSeq; NP_196132.3; NM_120595.3.
DR AlphaFoldDB; Q9FF61; -.
DR SMR; Q9FF61; -.
DR BioGRID; 15674; 2.
DR STRING; 3702.AT5G05130.1; -.
DR iPTMnet; Q9FF61; -.
DR PaxDb; Q9FF61; -.
DR PRIDE; Q9FF61; -.
DR ProteomicsDB; 232640; -.
DR EnsemblPlants; AT5G05130.1; AT5G05130.1; AT5G05130.
DR GeneID; 830395; -.
DR Gramene; AT5G05130.1; AT5G05130.1; AT5G05130.
DR KEGG; ath:AT5G05130; -.
DR Araport; AT5G05130; -.
DR eggNOG; KOG1001; Eukaryota.
DR HOGENOM; CLU_000315_2_5_1; -.
DR InParanoid; Q9FF61; -.
DR OMA; VGVMSNW; -.
DR OrthoDB; 132523at2759; -.
DR PhylomeDB; Q9FF61; -.
DR PRO; PR:Q9FF61; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FF61; baseline and differential.
DR Genevisible; Q9FF61; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0008094; F:ATP-dependent activity, acting on DNA; IBA:GO_Central.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016818; F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IBA:GO_Central.
DR Gene3D; 3.30.40.10; -; 1.
DR Gene3D; 3.40.50.10810; -; 2.
DR Gene3D; 3.40.50.300; -; 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR014905; HIRAN.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF08797; HIRAN; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00910; HIRAN; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; SSF52540; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 2: Evidence at transcript level;
KW Activator; ATP-binding; Chromatin regulator; Helicase; Hydrolase;
KW Metal-binding; Nucleotide-binding; Nucleus; Reference proteome;
KW Transcription; Zinc; Zinc-finger.
FT CHAIN 1..881
FT /note="Putative SWI/SNF-related matrix-associated actin-
FT dependent regulator of chromatin subfamily A member 3-like
FT 1"
FT /id="PRO_0000056187"
FT DOMAIN 272..486
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT DOMAIN 711..876
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT ZN_FING 635..674
FT /note="RING-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT REGION 308..343
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 681..703
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 437..440
FT /note="DEAH box"
FT COMPBIAS 316..343
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 285..292
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT CONFLICT 2
FT /note="R -> G (in Ref. 3; AAM13210)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 881 AA; 98616 MW; B4C4403FA085D05E CRC64;
MRVLKYFRAP SSLRHRSSPM AQFLRRFSSS PMANEDEFQS PVEPSQQQSQ DCVSESYLIG
FVIANIVGLK YYSGRINGRE MVGLVREPLN VYDNNAIRVL NTRSEQVGHI ERTVAAVLAP
MIDSHTIVVE GIVPNTRSNS NRYRIPCQIH VFAKLEASST VKSTISRGGL VLISESDTSF
GLSEAVVVKE QMGNGDKRSV DKIFKLVDEN VKLMGKLVAA EPPREVIKSE LFAHQKEGLG
WLLHREKSGE LPPFWEEKDG EFLNTLTNYR SDKRPDPLRG GVFADDMGLG KTLTLLSLIA
FDRYGNASTS TPTEEPLDGE GDKIEKKGKK RGRGKSSESV TRKKLKTDDV VGMNVSQKTT
LIVCPPSVIS AWITQLEEHT VPGILKVYMY HGGERTDDVN ELMKYDIVLT TYGTLAVEES
WEDSPVKKME WLRIILDEAH TIKNANAQQS RVVCKLKASR RWAVTGTPIQ NGSFDLYSLM
AFLRFEPFSI KSYWQSLIQR PLGQGNKKGL SRLQVLMATI SLRRTKEKSL IGLPPKTVET
CYVELSPEER QLYDHMEGEA KGVVQNLINN GSLMRNYSTV LSIILRLRQL CDDMSLCPPE
LRSFTTSTSV EDVTDKPELL QKLVAALQDG EDFDCPICIS PPTNIIITRC AHIFCRACIL
QTLQRSKPLC PLCRGSLTQS DLYNAPPPPP DSSNTDGEDA KSSTKSSKVS ALLSLLMASR
QENPNTKSVV FSQFRKMLLL LETPLKAAGF TILRLDGAMT VKKRTQVIGE FGNPELTGPV
VLLASLKASG TGINLTAASR VYLFDPWWNP AVEEQAMDRI HRIGQKQEVK MIRMIARNSI
EERVLELQQK KKNLANEAFK RRQKKDEREV NVEDVVALMS L
