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SMXL2_ARATH
ID   SMXL2_ARATH             Reviewed;         924 AA.
AC   Q9M0C5;
DT   16-MAR-2016, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   25-MAY-2022, entry version 121.
DE   RecName: Full=Protein SMAX1-LIKE 2 {ECO:0000303|PubMed:23893171};
DE            Short=AtSMXL2 {ECO:0000303|PubMed:23893171};
GN   Name=SMXL2 {ECO:0000303|PubMed:23893171};
GN   OrderedLocusNames=At4g30350 {ECO:0000312|Araport:AT4G30350};
GN   ORFNames=F17I23.310 {ECO:0000312|EMBL:CAB81028.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617198; DOI=10.1038/47134;
RA   Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA   Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA   Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA   de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA   Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA   Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA   Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA   Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA   Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA   Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA   Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA   Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA   Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA   Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA   Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA   Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA   Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA   Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA   Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA   Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA   Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA   Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA   Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA   Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA   Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA   de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA   Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA   Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA   Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA   Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA   Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA   Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA   Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA   Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA   Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA   O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA   Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA   Martienssen R., McCombie W.R.;
RT   "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL   Nature 402:769-777(1999).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   INDUCTION BY KARRIKINS AND STRIGOLACTONE, TISSUE SPECIFICITY, GENE FAMILY,
RP   AND NOMENCLATURE.
RX   PubMed=23893171; DOI=10.1104/pp.113.221259;
RA   Stanga J.P., Smith S.M., Briggs W.R., Nelson D.C.;
RT   "SUPPRESSOR OF MORE AXILLARY GROWTH2 1 controls seed germination and
RT   seedling development in Arabidopsis.";
RL   Plant Physiol. 163:318-330(2013).
RN   [4]
RP   REVIEW.
RX   PubMed=25179782; DOI=10.1016/j.pbi.2014.08.001;
RA   Bennett T., Leyser O.;
RT   "Strigolactone signalling: standing on the shoulders of DWARFs.";
RL   Curr. Opin. Plant Biol. 22:7-13(2014).
RN   [5]
RP   FUNCTION, AND DISRUPTION PHENOTYPE.
RX   PubMed=26754282; DOI=10.1007/s00425-015-2458-2;
RA   Stanga J.P., Morffy N., Nelson D.C.;
RT   "Functional redundancy in the control of seedling growth by the karrikin
RT   signaling pathway.";
RL   Planta 243:1397-1406(2016).
CC   -!- FUNCTION: Probable component of a transcriptional corepressor complex
CC       that acts specifically in the karrikin pathway (PubMed:26754282).
CC       Controls seedling growth redundantly with SMAX1, but is not involved in
CC       leaf morphology, shoot branching or germination control
CC       (PubMed:26754282). {ECO:0000269|PubMed:26754282}.
CC   -!- SUBUNIT: Interacts probably with TPL/TPR in an EAR-motif dependent
CC       manner. {ECO:0000250|UniProtKB:Q9FHH2}.
CC   -!- TISSUE SPECIFICITY: Expressed in seedlings and leaves. Detected in
CC       roots and axillary branches. {ECO:0000269|PubMed:23893171}.
CC   -!- INDUCTION: Up-regulated by karrikins and strigolactone treatments.
CC       {ECO:0000269|PubMed:23893171}.
CC   -!- DISRUPTION PHENOTYPE: No visible phenotype under continuous red light
CC       (PubMed:26754282). Smax1 and smxl2 double mutants have substential
CC       reduction in hypocotyl elongation (PubMed:26754282).
CC       {ECO:0000269|PubMed:26754282}.
CC   -!- SIMILARITY: Belongs to the ClpA/ClpB family. {ECO:0000305}.
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DR   EMBL; AL161576; CAB81028.1; -; Genomic_DNA.
DR   EMBL; CP002687; AEE85755.1; -; Genomic_DNA.
DR   PIR; H85354; H85354.
DR   RefSeq; NP_194764.1; NM_119181.3.
DR   AlphaFoldDB; Q9M0C5; -.
DR   STRING; 3702.AT4G30350.1; -.
DR   PaxDb; Q9M0C5; -.
DR   PRIDE; Q9M0C5; -.
DR   ProteomicsDB; 234474; -.
DR   EnsemblPlants; AT4G30350.1; AT4G30350.1; AT4G30350.
DR   GeneID; 829158; -.
DR   Gramene; AT4G30350.1; AT4G30350.1; AT4G30350.
DR   KEGG; ath:AT4G30350; -.
DR   Araport; AT4G30350; -.
DR   TAIR; locus:2118806; AT4G30350.
DR   eggNOG; KOG1051; Eukaryota.
DR   HOGENOM; CLU_006575_0_2_1; -.
DR   InParanoid; Q9M0C5; -.
DR   OMA; SKMSCCS; -.
DR   OrthoDB; 173851at2759; -.
DR   PhylomeDB; Q9M0C5; -.
DR   PRO; PR:Q9M0C5; -.
DR   Proteomes; UP000006548; Chromosome 4.
DR   ExpressionAtlas; Q9M0C5; baseline and differential.
DR   GO; GO:0007623; P:circadian rhythm; IEP:TAIR.
DR   GO; GO:1902347; P:response to strigolactone; IMP:TAIR.
DR   Gene3D; 1.10.1780.10; -; 1.
DR   Gene3D; 3.40.50.300; -; 2.
DR   InterPro; IPR036628; Clp_N_dom_sf.
DR   InterPro; IPR004176; Clp_R_dom.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF81923; SSF81923; 1.
DR   PROSITE; PS51903; CLP_R; 1.
PE   2: Evidence at transcript level;
KW   Reference proteome; Repeat; Transcription; Transcription regulation.
FT   CHAIN           1..924
FT                   /note="Protein SMAX1-LIKE 2"
FT                   /id="PRO_0000435711"
FT   DOMAIN          8..181
FT                   /note="Clp R"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT   REGION          12..83
FT                   /note="Repeat 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT   REGION          86..107
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          109..181
FT                   /note="Repeat 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT   REGION          522..552
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           780..784
FT                   /note="EAR"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   924 AA;  101395 MW;  E5C67020FD9031E2 CRC64;
     MRADLITIQQ TLTPEAATVL NQSIAEATRR NHGHTTPLHV AATLLSSSSG YLRQACIKSH
     PNSSHPLQCR ALELCFSVAL ERLPTTSTTT TTTSSSSSSS PSQTQEPLLS NALTAALKRA
     QAHQRRGCPE QQQQPLLAVK VELEQLIISI LDDPSVSRVM REASFSSPAV KSAIEQSLIG
     NSVSNSRQTG SPGIINPSAI GFGYRSVPAP VNRNLYLNPR LQQPGVGMQS GMMIQRTDEA
     KRVIEIMIRT RKRNPVLVGD SEPHILVKEI LEKIENGEFS DGALRNFQVI RLEKELVSQL
     ATRLGEISGL VETRIGGGGV VLDLGDLKWL VEHPAANGGA VVEMRKLLER YKGRLCFIGT
     ATCETYLRCQ VYYPSMENDW DLQAIPIAAK SSLPAIFPRL GSNNNNNAML LSNNIISIES
     ISPTRSFQIP MSKMSCCSRC LQSYENDVAK VEKDLTGDNR SVLPQWLQNA KANDDGDKKL
     TKDQQIVELQ KKWNDLCLRL HPNQSVSERI APSTLSMMKI NTRSDITPPG SPVGTDLVLG
     RPNRGLSSPE KKTREARFGK LGDSFDIDLF KKLLKGLAKS VWWQHDAASS VAAAITECKH
     GNGKSKGDIW LMFTGPDRAG KSKMASALSD LVSGSQPITI SLGSSSRMDD GLNIRGKTAL
     DRFAEAVRRN PFAVIVLEDI DEADILLRNN VKIAIERGRI CDSYGREVSL GNVIIILTAN
     SSLGSAKNVA SIDETRLESL VNKGWELRLS VCNSSKTRKR KPNWLYSDND QTKQRKEICF
     DLNEAAEFDS SSDVTVEHDQ EDNGNLVHKL VGLVDDAILF RPVDFDSIKS KTAESLKKRF
     SNGLADGLTV EIEDDALERI AGAIWLSKIS LEEWLEEAMG SSLNSVKSRV SSSEDSVIRI
     ELEDDLNDRI SGGYLPSSIR TVVV
 
 
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