SNZ_ARATH
ID SNZ_ARATH Reviewed; 325 AA.
AC Q6PV67; O80956; Q8W4G2;
DT 21-AUG-2007, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=AP2-like ethylene-responsive transcription factor SNZ;
DE AltName: Full=Protein SCHNARCHZAPFEN;
GN Name=SNZ; OrderedLocusNames=At2g39250; ORFNames=T16B24.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, AND INDUCTION.
RX PubMed=14573523; DOI=10.1242/dev.00842;
RA Schmid M., Uhlenhaut N.H., Godard F., Demar M., Bressan R., Weigel D.,
RA Lohmann J.U.;
RT "Dissection of floral induction pathways using global expression
RT analysis.";
RL Development 130:6001-6012(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16407444; DOI=10.1104/pp.105.073783;
RA Nakano T., Suzuki K., Fujimura T., Shinshi H.;
RT "Genome-wide analysis of the ERF gene family in Arabidopsis and rice.";
RL Plant Physiol. 140:411-432(2006).
CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to the
CC GCC-box pathogenesis-related promoter element. May be involved in the
CC regulation of gene expression by stress factors and by components of
CC stress signal transduction pathways (By similarity). Repressor of
CC flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
CC -!- INTERACTION:
CC Q6PV67; Q9LQF0: TCP23; NbExp=3; IntAct=EBI-4436014, EBI-15192297;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6PV67-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6PV67-2; Sequence=VSP_027413, VSP_027414;
CC -!- INDUCTION: Repressed by miR172 after photoperiod changement.
CC {ECO:0000269|PubMed:14573523}.
CC -!- MISCELLANEOUS: 'Schnarchzapfen' means 'snoring cone' in German.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. AP2
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC28983.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY576276; AAS88429.1; -; mRNA.
DR EMBL; AC004697; AAC28983.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC09650.1; -; Genomic_DNA.
DR EMBL; AY062578; AAL32656.1; -; mRNA.
DR EMBL; AY093386; AAM13385.1; -; mRNA.
DR PIR; T02577; T02577.
DR RefSeq; NP_001325386.1; NM_001336762.1.
DR RefSeq; NP_850313.2; NM_179982.3. [Q6PV67-1]
DR AlphaFoldDB; Q6PV67; -.
DR SMR; Q6PV67; -.
DR BioGRID; 3848; 5.
DR IntAct; Q6PV67; 5.
DR STRING; 3702.AT2G39250.1; -.
DR PaxDb; Q6PV67; -.
DR PRIDE; Q6PV67; -.
DR ProteomicsDB; 232609; -. [Q6PV67-1]
DR EnsemblPlants; AT2G39250.1; AT2G39250.1; AT2G39250. [Q6PV67-1]
DR GeneID; 818510; -.
DR Gramene; AT2G39250.1; AT2G39250.1; AT2G39250. [Q6PV67-1]
DR KEGG; ath:AT2G39250; -.
DR Araport; AT2G39250; -.
DR TAIR; locus:2056048; AT2G39250.
DR eggNOG; ENOG502R1D7; Eukaryota.
DR HOGENOM; CLU_035462_3_1_1; -.
DR InParanoid; Q6PV67; -.
DR OrthoDB; 1171664at2759; -.
DR PhylomeDB; Q6PV67; -.
DR PRO; PR:Q6PV67; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q6PV67; baseline and differential.
DR Genevisible; Q6PV67; AT.
DR GO; GO:0005730; C:nucleolus; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW.
DR CDD; cd00018; AP2; 1.
DR Gene3D; 3.30.730.10; -; 1.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 1.
DR SMART; SM00380; AP2; 1.
DR SUPFAM; SSF54171; SSF54171; 1.
DR PROSITE; PS51032; AP2_ERF; 1.
PE 1: Evidence at protein level;
KW Activator; Alternative splicing; DNA-binding; Ethylene signaling pathway;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..325
FT /note="AP2-like ethylene-responsive transcription factor
FT SNZ"
FT /id="PRO_0000297944"
FT DNA_BIND 108..164
FT /note="AP2/ERF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 52..79
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..70
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 217..222
FT /note="RGLNAA -> SSSKMQ (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_027413"
FT VAR_SEQ 223..325
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_027414"
SQ SEQUENCE 325 AA; 36440 MW; 29051518E1755E6E CRC64;
MLDLNLGILS THNEDEDCKV PTSIFIQEED SINPSNDNLS LITFGILKRN VEILPPPPPP
PPPPPPSENE LSGPGNEWLD LSSMQRNKQE TLVMKKKSRR GPRSRSSHYR GVTFYRRTGR
WESHIWDCGK QVYLGGFDTA YTAARAYDRA AIRFRGLQAD INFIVDDYKQ DIEKMKNLSK
EEFVQSLRRA SASLARGGSK YKNTHMRNDH IHLFQNRGLN AAAAKCNEIR KMEGDIKLGA
HSKGNEHNDL ELSLGISSSS KVRILEPADY YMGLNRSVTS LHGKPLPGYL PITEIKPLKT
VVASSGFPFI TMINPSSLSL SCFDP
