SODF_METTH
ID SODF_METTH Reviewed; 205 AA.
AC P18868;
DT 01-NOV-1990, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1990, sequence version 1.
DT 03-AUG-2022, entry version 144.
DE RecName: Full=Superoxide dismutase [Fe];
DE EC=1.15.1.1;
GN Name=sod; OrderedLocusNames=MTH_160;
OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
OS 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum).
OC Archaea; Euryarchaeota; Methanomada group; Methanobacteria;
OC Methanobacteriales; Methanobacteriaceae; Methanothermobacter.
OX NCBI_TaxID=187420;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=2122808; DOI=10.1016/0003-9861(90)90633-a;
RA Takao M., Oikawa A., Yasui A.;
RT "Characterization of a superoxide dismutase gene from the archaebacterium
RT Methanobacterium thermoautotrophicum.";
RL Arch. Biochem. Biophys. 283:210-216(1990).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H;
RX PubMed=9371463; DOI=10.1128/jb.179.22.7135-7155.1997;
RA Smith D.R., Doucette-Stamm L.A., Deloughery C., Lee H.-M., Dubois J.,
RA Aldredge T., Bashirzadeh R., Blakely D., Cook R., Gilbert K., Harrison D.,
RA Hoang L., Keagle P., Lumm W., Pothier B., Qiu D., Spadafora R., Vicare R.,
RA Wang Y., Wierzbowski J., Gibson R., Jiwani N., Caruso A., Bush D.,
RA Safer H., Patwell D., Prabhakar S., McDougall S., Shimer G., Goyal A.,
RA Pietrovski S., Church G.M., Daniels C.J., Mao J.-I., Rice P., Noelling J.,
RA Reeve J.N.;
RT "Complete genome sequence of Methanobacterium thermoautotrophicum deltaH:
RT functional analysis and comparative genomics.";
RL J. Bacteriol. 179:7135-7155(1997).
RN [3]
RP CHARACTERIZATION.
RX PubMed=1907270; DOI=10.1016/s0021-9258(18)98656-4;
RA Takao M., Yasui A., Oikawa A.;
RT "Unique characteristics of superoxide dismutase of a strictly anaerobic
RT archaebacterium Methanobacterium thermoautotrophicum.";
RL J. Biol. Chem. 266:14151-14154(1991).
RN [4]
RP STRUCTURE BY NMR.
RX PubMed=11670835; DOI=10.1021/ic981172o;
RA Renault J.P., Morgenstern-Badarau I., Piccioli M.;
RT "Thermochromic conformational change of Methanobacterium
RT thermoautotrophicum iron superoxide dismutase.";
RL Inorg. Chem. 38:614-615(1999).
RN [5]
RP EPR SPECTROSCOPY.
RX PubMed=11197024; DOI=10.1021/ic0000451;
RA Renault J.P., Verchere-Beaur C., Morgenstern-Badarau I., Yamakura F.,
RA Gerloch M.;
RT "EPR and ligand field studies of iron superoxide dismutases and iron-
RT substituted manganese superoxide dismutases: relationships between
RT electronic structure of the active site and activity.";
RL Inorg. Chem. 39:2666-2675(2000).
CC -!- FUNCTION: Destroys superoxide anion radicals which are normally
CC produced within the cells and which are toxic to biological systems.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=2 H(+) + 2 superoxide = H2O2 + O2; Xref=Rhea:RHEA:20696,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:15379, ChEBI:CHEBI:16240,
CC ChEBI:CHEBI:18421; EC=1.15.1.1;
CC -!- COFACTOR:
CC Name=Fe cation; Xref=ChEBI:CHEBI:24875;
CC Note=Binds 1 Fe cation per subunit.;
CC -!- SUBUNIT: Homotetramer.
CC -!- SIMILARITY: Belongs to the iron/manganese superoxide dismutase family.
CC {ECO:0000305}.
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DR EMBL; D00614; BAA00489.1; -; Genomic_DNA.
DR EMBL; AE000666; AAB84666.1; -; Genomic_DNA.
DR PIR; F69080; F69080.
DR PDB; 1MA1; X-ray; 2.60 A; A/B/C/D/E/F=1-205.
DR PDBsum; 1MA1; -.
DR AlphaFoldDB; P18868; -.
DR SMR; P18868; -.
DR STRING; 187420.MTH_160; -.
DR EnsemblBacteria; AAB84666; AAB84666; MTH_160.
DR KEGG; mth:MTH_160; -.
DR PATRIC; fig|187420.15.peg.132; -.
DR HOGENOM; CLU_031625_2_2_2; -.
DR OMA; KWGSFDK; -.
DR EvolutionaryTrace; P18868; -.
DR Proteomes; UP000005223; Chromosome.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0004784; F:superoxide dismutase activity; IEA:UniProtKB-EC.
DR Gene3D; 1.10.287.990; -; 1.
DR Gene3D; 3.55.40.20; -; 1.
DR InterPro; IPR001189; Mn/Fe_SOD.
DR InterPro; IPR019833; Mn/Fe_SOD_BS.
DR InterPro; IPR019832; Mn/Fe_SOD_C.
DR InterPro; IPR019831; Mn/Fe_SOD_N.
DR InterPro; IPR036324; Mn/Fe_SOD_N_sf.
DR InterPro; IPR036314; SOD_C_sf.
DR Pfam; PF02777; Sod_Fe_C; 1.
DR Pfam; PF00081; Sod_Fe_N; 1.
DR PIRSF; PIRSF000349; SODismutase; 1.
DR PRINTS; PR01703; MNSODISMTASE.
DR SUPFAM; SSF46609; SSF46609; 1.
DR SUPFAM; SSF54719; SSF54719; 1.
DR PROSITE; PS00088; SOD_MN; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Iron; Metal-binding; Oxidoreductase; Reference proteome.
FT CHAIN 1..205
FT /note="Superoxide dismutase [Fe]"
FT /id="PRO_0000160006"
FT BINDING 33
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT BINDING 81
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT BINDING 167
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT BINDING 171
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT TURN 18..24
FT /evidence="ECO:0007829|PDB:1MA1"
FT HELIX 27..35
FT /evidence="ECO:0007829|PDB:1MA1"
FT HELIX 37..57
FT /evidence="ECO:0007829|PDB:1MA1"
FT HELIX 64..86
FT /evidence="ECO:0007829|PDB:1MA1"
FT TURN 91..93
FT /evidence="ECO:0007829|PDB:1MA1"
FT HELIX 100..110
FT /evidence="ECO:0007829|PDB:1MA1"
FT HELIX 113..125
FT /evidence="ECO:0007829|PDB:1MA1"
FT STRAND 128..138
FT /evidence="ECO:0007829|PDB:1MA1"
FT TURN 139..142
FT /evidence="ECO:0007829|PDB:1MA1"
FT STRAND 143..150
FT /evidence="ECO:0007829|PDB:1MA1"
FT TURN 151..153
FT /evidence="ECO:0007829|PDB:1MA1"
FT STRAND 163..167
FT /evidence="ECO:0007829|PDB:1MA1"
FT HELIX 170..172
FT /evidence="ECO:0007829|PDB:1MA1"
FT HELIX 174..177
FT /evidence="ECO:0007829|PDB:1MA1"
FT HELIX 181..188
FT /evidence="ECO:0007829|PDB:1MA1"
FT TURN 189..191
FT /evidence="ECO:0007829|PDB:1MA1"
FT HELIX 194..202
FT /evidence="ECO:0007829|PDB:1MA1"
SQ SEQUENCE 205 AA; 24096 MW; F38A93265FB34AD5 CRC64;
MNDLEKKFYE LPELPYPYDA LEPHISREQL TIHHQKHHQA YVDGANALLR KLDEARESDT
DVDIKAALKE LSFHVGGYVL HLFFWGNMGP ADECGGEPSG KLAEYIEKDF GSFERFRKEF
SQAAISAEGS GWAVLTYCQR TDRLFIMQVE KHNVNVIPHF RILLVLDVWE HAYYIDYRNV
RPDYVEAFWN IVNWKEVEKR FEDIL