SODN_STRCO
ID SODN_STRCO Reviewed; 131 AA.
AC P80735; O51921;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2000, sequence version 2.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Superoxide dismutase [Ni];
DE EC=1.15.1.1;
DE AltName: Full=NiSOD;
DE AltName: Full=Nickel-containing superoxide dismutase;
DE Flags: Precursor;
GN Name=sodN; Synonyms=sod1; OrderedLocusNames=SCO5254; ORFNames=2SC7G11.16c;
OS Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145).
OC Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae;
OC Streptomyces; Streptomyces albidoflavus group.
OX NCBI_TaxID=100226;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=ATCC 10147 / DSM 41007 / JCM 4020 / NBRC 3176 / KCC S-0020, and
RC ATCC BAA-471 / A3(2) / M145;
RX PubMed=9466266; DOI=10.1046/j.1365-2958.1998.00674.x;
RA Kim E.-J., Chung H.-J., Suh B., Hah Y.C., Roe J.-H.;
RT "Transcriptional and post-transcriptional regulation by nickel of sodN gene
RT encoding nickel-containing superoxide dismutase from Streptomyces
RT coelicolor Muller.";
RL Mol. Microbiol. 27:187-195(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-471 / A3(2) / M145;
RX PubMed=12000953; DOI=10.1038/417141a;
RA Bentley S.D., Chater K.F., Cerdeno-Tarraga A.-M., Challis G.L.,
RA Thomson N.R., James K.D., Harris D.E., Quail M.A., Kieser H., Harper D.,
RA Bateman A., Brown S., Chandra G., Chen C.W., Collins M., Cronin A.,
RA Fraser A., Goble A., Hidalgo J., Hornsby T., Howarth S., Huang C.-H.,
RA Kieser T., Larke L., Murphy L.D., Oliver K., O'Neil S., Rabbinowitsch E.,
RA Rajandream M.A., Rutherford K.M., Rutter S., Seeger K., Saunders D.,
RA Sharp S., Squares R., Squares S., Taylor K., Warren T., Wietzorrek A.,
RA Woodward J.R., Barrell B.G., Parkhill J., Hopwood D.A.;
RT "Complete genome sequence of the model actinomycete Streptomyces coelicolor
RT A3(2).";
RL Nature 417:141-147(2002).
RN [3]
RP PROTEIN SEQUENCE OF 15-28.
RC STRAIN=ATCC 10147 / DSM 41007 / JCM 4020 / NBRC 3176 / KCC S-0020;
RX PubMed=8836134; DOI=10.1042/bj3180889;
RA Youn H.-D., Kim E.-J., Roe J.-H., Hah Y.C., Kang S.-O.;
RT "A novel nickel-containing superoxide dismutase from Streptomyces spp.";
RL Biochem. J. 318:889-896(1996).
RN [4]
RP PROTEIN SEQUENCE OF 15-28.
RC STRAIN=ATCC 10147 / DSM 41007 / JCM 4020 / NBRC 3176 / KCC S-0020;
RX PubMed=8898904; DOI=10.1111/j.1432-1033.1996.0178t.x;
RA Kim F.-J., Kim H.-P., Hah Y.V., Roe J.-H.;
RT "Differential expression of superoxide dismutases containing Ni and Fe/Zn
RT in Streptomyces coelicolor.";
RL Eur. J. Biochem. 241:178-185(1996).
RN [5]
RP X-RAY CRYSTALLOGRAPHY (1.3 ANGSTROMS) OF 15-131 IN COMPLEX WITH NICKEL
RP IONS, AND SUBUNIT.
RX PubMed=15209499; DOI=10.1021/bi0496081;
RA Barondeau D.P., Kassmann C.J., Bruns C.K., Tainer J.A., Getzoff E.D.;
RT "Nickel superoxide dismutase structure and mechanism.";
RL Biochemistry 43:8038-8047(2004).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=2 H(+) + 2 superoxide = H2O2 + O2; Xref=Rhea:RHEA:20696,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:15379, ChEBI:CHEBI:16240,
CC ChEBI:CHEBI:18421; EC=1.15.1.1;
CC -!- COFACTOR:
CC Name=Ni(2+); Xref=ChEBI:CHEBI:49786;
CC -!- SUBUNIT: Homohexamer. The hexameric protein has a roughly the shape of
CC a hollow sphere with an outer diameter of 60 angstroms and a large
CC interior cavity. {ECO:0000269|PubMed:15209499}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm.
CC -!- SIMILARITY: Belongs to the nickel superoxide dismutase family.
CC {ECO:0000305}.
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DR EMBL; AF012193; AAC38082.1; -; Genomic_DNA.
DR EMBL; AF104994; AAF25537.1; -; Genomic_DNA.
DR EMBL; AL939123; CAC05965.1; -; Genomic_DNA.
DR RefSeq; NP_629400.1; NC_003888.3.
DR RefSeq; WP_003973716.1; NZ_VNID01000008.1.
DR PDB; 1T6I; X-ray; 2.81 A; A/B/C=15-131.
DR PDB; 1T6Q; X-ray; 2.05 A; A/B/C=15-131.
DR PDB; 1T6U; X-ray; 1.30 A; A/B/C/D/E/F/G/H/I/J/K/L=15-131.
DR PDB; 3G4X; X-ray; 2.01 A; A/B/C=15-131.
DR PDB; 3G4Z; X-ray; 1.87 A; A/B/C=15-131.
DR PDB; 3G50; X-ray; 1.90 A; A/B/C=15-131.
DR PDB; 4NCQ; X-ray; 2.08 A; A/B/C=15-131.
DR PDBsum; 1T6I; -.
DR PDBsum; 1T6Q; -.
DR PDBsum; 1T6U; -.
DR PDBsum; 3G4X; -.
DR PDBsum; 3G4Z; -.
DR PDBsum; 3G50; -.
DR PDBsum; 4NCQ; -.
DR AlphaFoldDB; P80735; -.
DR SMR; P80735; -.
DR STRING; 100226.SCO5254; -.
DR GeneID; 1100695; -.
DR KEGG; sco:SCO5254; -.
DR PATRIC; fig|100226.15.peg.5338; -.
DR eggNOG; ENOG502ZR3M; Bacteria.
DR HOGENOM; CLU_141681_0_0_11; -.
DR OMA; AHCDGPC; -.
DR EvolutionaryTrace; P80735; -.
DR Proteomes; UP000001973; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0016151; F:nickel cation binding; IEA:InterPro.
DR GO; GO:0004784; F:superoxide dismutase activity; IEA:UniProtKB-EC.
DR Gene3D; 1.20.120.400; -; 1.
DR InterPro; IPR036502; NiSOD_sf.
DR InterPro; IPR014123; Superoxide_dismutase_Ni-type.
DR Pfam; PF09055; Sod_Ni; 1.
DR SUPFAM; SSF109770; SSF109770; 1.
DR TIGRFAMs; TIGR02753; sodN; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Antioxidant; Cytoplasm; Direct protein sequencing;
KW Metal-binding; Nickel; Oxidoreductase; Reference proteome.
FT PROPEP 1..14
FT /evidence="ECO:0000269|PubMed:8836134,
FT ECO:0000269|PubMed:8898904"
FT /id="PRO_0000032906"
FT CHAIN 15..131
FT /note="Superoxide dismutase [Ni]"
FT /id="PRO_0000032907"
FT BINDING 15
FT /ligand="Ni(2+)"
FT /ligand_id="ChEBI:CHEBI:49786"
FT /ligand_note="catalytic"
FT BINDING 16
FT /ligand="Ni(2+)"
FT /ligand_id="ChEBI:CHEBI:49786"
FT /ligand_note="catalytic"
FT BINDING 20
FT /ligand="Ni(2+)"
FT /ligand_id="ChEBI:CHEBI:49786"
FT /ligand_note="catalytic"
FT CONFLICT 16
FT /note="C -> G (in Ref. 3; AA sequence and 4; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 20
FT /note="C -> G (in Ref. 3; AA sequence and 4; AA sequence)"
FT /evidence="ECO:0000305"
FT STRAND 17..19
FT /evidence="ECO:0007829|PDB:3G4Z"
FT HELIX 26..44
FT /evidence="ECO:0007829|PDB:1T6U"
FT HELIX 48..75
FT /evidence="ECO:0007829|PDB:1T6U"
FT HELIX 79..84
FT /evidence="ECO:0007829|PDB:1T6U"
FT HELIX 88..103
FT /evidence="ECO:0007829|PDB:1T6U"
FT HELIX 108..128
FT /evidence="ECO:0007829|PDB:1T6U"
SQ SEQUENCE 131 AA; 14703 MW; 8DA21AFBAC0D7EF6 CRC64;
MLSRLFAPKV TVSAHCDLPC GVYDPAQARI EAESVKAVQE KMAGNDDPHF QTRATVIKEQ
RAELAKHHVS VLWSDYFKPP HFEKYPELHQ LVNDTLKALS AAKGSKDPAT GQKALDYIAQ
IDKIFWETKK A