SOFL5_ARATH
ID SOFL5_ARATH Reviewed; 170 AA.
AC Q8L9K4; O81896;
DT 17-JUN-2020, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Protein SOB FIVE-LIKE 5 {ECO:0000303|PubMed:29467189};
DE Short=AtSOFL5 {ECO:0000303|PubMed:29467189};
GN Name=SOFL5 {ECO:0000303|PubMed:29467189};
GN OrderedLocusNames=At4g33800 {ECO:0000312|Araport:AT4G33800};
GN ORFNames=T16L1.290 {ECO:0000312|EMBL:CAA20593.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Quinitio C., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=29467189; DOI=10.1534/g3.118.200040;
RA Tayengwa R., Zhao J., Pierce C.F., Werner B.E., Neff M.M.;
RT "Synopsis of the SOFL plant-specific gene family.";
RL G3 (Bethesda) 8:1281-1290(2018).
CC -!- FUNCTION: Involved in cytokinin-mediated development.
CC {ECO:0000250|UniProtKB:Q67YG7}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250|UniProtKB:Q67YG7}. Nucleus
CC {ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, roots, flowers and siliques
CC (PubMed:29467189). Barely detectable in leaves (PubMed:29467189).
CC {ECO:0000269|PubMed:29467189}.
CC -!- DOMAIN: Domains SOFL-A and SOFL-B are required for function in
CC cytokinin-mediated development. {ECO:0000250|UniProtKB:Q9CA45}.
CC -!- SIMILARITY: Belongs to the SOFL plant protein family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA20593.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB80097.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL031394; CAA20593.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161584; CAB80097.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE86279.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66730.1; -; Genomic_DNA.
DR EMBL; BT025736; ABF83626.1; -; mRNA.
DR EMBL; AY088383; AAM65921.1; -; mRNA.
DR PIR; T04997; T04997.
DR RefSeq; NP_001328608.1; NM_001342234.1.
DR RefSeq; NP_567937.1; NM_119538.7.
DR AlphaFoldDB; Q8L9K4; -.
DR STRING; 3702.AT4G33800.1; -.
DR PaxDb; Q8L9K4; -.
DR PRIDE; Q8L9K4; -.
DR EnsemblPlants; AT4G33800.1; AT4G33800.1; AT4G33800.
DR EnsemblPlants; AT4G33800.2; AT4G33800.2; AT4G33800.
DR GeneID; 829522; -.
DR Gramene; AT4G33800.1; AT4G33800.1; AT4G33800.
DR Gramene; AT4G33800.2; AT4G33800.2; AT4G33800.
DR KEGG; ath:AT4G33800; -.
DR Araport; AT4G33800; -.
DR TAIR; locus:2134288; AT4G33800.
DR eggNOG; ENOG502S0VS; Eukaryota.
DR HOGENOM; CLU_082551_1_0_1; -.
DR InParanoid; Q8L9K4; -.
DR OMA; THMKGKS; -.
DR OrthoDB; 1438630at2759; -.
DR PhylomeDB; Q8L9K4; -.
DR PRO; PR:Q8L9K4; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q8L9K4; baseline and differential.
DR GO; GO:0005737; C:cytoplasm; ISS:UniProtKB.
DR GO; GO:0005634; C:nucleus; ISS:UniProtKB.
DR GO; GO:0009691; P:cytokinin biosynthetic process; IEA:UniProtKB-KW.
DR GO; GO:0009690; P:cytokinin metabolic process; ISS:UniProtKB.
DR GO; GO:0009736; P:cytokinin-activated signaling pathway; ISS:UniProtKB.
DR InterPro; IPR044670; SOFL.
DR PANTHER; PTHR33347; PTHR33347; 1.
PE 2: Evidence at transcript level;
KW Cytokinin biosynthesis; Cytokinin signaling pathway; Cytoplasm; Nucleus;
KW Reference proteome.
FT CHAIN 1..170
FT /note="Protein SOB FIVE-LIKE 5"
FT /id="PRO_0000450253"
FT REGION 17..78
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 10..15
FT /note="SOFL-A"
FT /evidence="ECO:0000305|PubMed:29467189"
FT MOTIF 61..70
FT /note="SOFL-B"
FT /evidence="ECO:0000305|PubMed:29467189"
FT MOTIF 79..86
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
FT COMPBIAS 17..31
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 32..48
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 170 AA; 19426 MW; 471FD286CE67A317 CRC64;
MLGSSSGCES GWTLYLDQSV SSPSPSCFRD SNGFDSRRRS KDSWDQNYVH QEEEEEEDDL
SMISDASSGP RNISEEDSVK KINIVGLKKQ CKREKKRRDY EKMNSLLDDT ASSPLFNFPH
MLQKSVGGNK IEQTFPESTL DYSQGFSATQ FQDKTAFQEQ CGYLHMETRF
